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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCGAGAGGAGTTCAAAACATGCACAATGCTTATTATTGCTCACCGACTAAATACCATAATCGACTGTGACCGGATCCTTGTCCTTGATTCTGGTCAGgtaatgttattcttgccaactttctggtttcctacttggtaatgcaccagtgtagcatctgggtttgagaagatgaaggcttacacttcaatgaaattcacatggaatgttaatatttgataactcactagttagaacctgtttgacatttctttcag

Basic information

species Vitis vinifera
transcript Vv10s0003g04460.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 27
CATTCGAGAGGAGTTCAAAACATGCACAATGCTTATTATTGCTCACCGACTAAATACCATAATCGACTGTGACCGGATCCTTGTCCTTGATTCTGGTCAGgtaatgttattcttgccaactttctggtttcctacttggtaatgcaccagtgtagcatctgggtttgagaagatgaaggcttacacttcaatgaaattcacatggaatgttaatatttgataactcactagttagaacctgtttgacatttctttcag
|||||| ||||| |||||  | |||||||||||| ||||||||||| |  | |||||||| ||||||||||||  ||| ||||| |||  ||||||||||||||||  |   || |  | |    |     ||   |  | ||  |      |   |  ||| |   ||  |||    |  |   |||  || ||| | |   | ||||  ||| |||| ||                                    
CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaa---ctgacttattatatattctcttcagaaatggataaaagg-gattcttgtgtg-gcttacataaaact-attggaaatgccaat-tttgttag-----------------------------------

upper sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 25
CATTCGAGAGGAGTTCAAAACATGCACAATGCTTATTATTGCTCACCGACTAAATACCATAATCGACTGTGACCGGATCCTTGTCCTTGATTCTGGTCAGgtaatgttattcttgccaactttctggtttcctacttggtaatgcaccagtgtagcatctgggtttgagaagatgaa-ggcttacacttcaatgaaattcacatggaatgttaatatttgataactcactagttagaacctgtttgacatttctttcag
||| || ||||| |||||  | || |||||||||||||| |||||| || | |||||||| |||||||| |||  ||||||||| |||  |||||||||||||| |  |   ||       |||      |   |||   ||    |  ||  || ||       |       |||  | | || |  |   | || ||     |                                                      
CATACGTGAGGAATTCAAGTCTTGTACAATGCTTATTATCGCTCACAGATTGAATACCATCATCGACTGCGACAAGATCCTTGTGCTTAGTTCTGGTCAGgtaaggccaggattattg---ttcatagaactcgcttaagaagattctggtacagaatagtaacgtccttctgtgactgacataaaactacgtcaattttgttag------------------------------------------------------