Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCTgttaagtgtattcacaaaattatacattccagttaattctcattaggatgtaattttcattgtgttgataggttttttacctaatgtcttatttatcccttttttttctcaag

Basic information

species Vitis vinifera
transcript Vv10s0003g04450.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 20
GTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCTgttaagtgtattcacaaaattatacattccagttaattctcattaggatgtaattttcattgtgttgataggttttttacctaatgtcttatttatcccttttttttctcaag
|| ||||||||||||||||||||||| || ||||||  || ||  ||| ||||||  |||| | | |||||  |||| ||||| ||  ||||||||||||| |  | | || | |||||   |  |||   |  |  || ||  | || |  |||| ||  |  |   |  | | |   || |                             
GTTCGTGAAAACATATTATTTGGATCAAAATTTGAATATGAACAATATCGGAAGGTCATTGATATGACTGCTCTACAGCATGATCTCAACTTACTACCTgtaagat-tgtttataaaatgtcatcttc---tctaaactaatgggaattttctttttataatcatctcatttatatcttctcag----------------------------

upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 18
GTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCTgttaagtgtattcacaaaattatacattccagttaattctcattaggatgtaattttcattgtgttgataggttt-tttacctaatgtcttatttatcccttttttttctcaag
 | ||||||||||| |||||||| ||  |||||||  ||| | | ||||||| |||||||| ||| ||||| |||||||| || ||||| ||  | || |||||||  | | |||    || |||  || ||  ||         ||  |  || | | |   ||  |   |||  |||   |                              
CTGCGTGAAAACATTTTATTTGGGTCAGATTTTGAGTCTGAAAGATATTGGAGGGCTATTGATGTGACTGCCTTACAACACGATCTTGATTTGTTTCCAgttaagtaaaatgacaggcatacacaacccggtacat---------gacat--ttcttactaacttcctgaatttgcttattcag-----------------------------