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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttcttgttcttgttcttgttttcatgagagatttattttcatcaaagaaaatttaaggtcatgttttgacttgtaacttgtttcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02590.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045795|gb|FQ440980.1|FQ440980
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|110384739|gb|EC949198.1|EC949198
EST:     GGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAA
EST: gi|110732518|gb|EE107876.1|EE107876
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|349832459|gb|FQ421020.1|FQ421020
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|349808085|gb|FQ402476.1|FQ402476
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
EST: gi|110391854|gb|EC956857.1|EC956857
EST:     GGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCAT
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCAT
EST: gi|110699183|gb|EE075958.1|EE075958
EST:     GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG                         ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA
genomic: GGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAGgttggttctt ... cttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCA