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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggttacag

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggtt--acag
 || || || ||||| ||||||||||| || || ||||||||||| |||||||| |||||||||||||| || || || || ||| | ||||| || ||||| |   | |   |     || |   |   ||||   |    ||   ||    | |   || |    |||||||   | | || | || |  | || | |   ||   |||
TTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGgttagtcact-atatctttatctaaggaactgcaacatt---caggttccttgattagattatg---ctgtgatgttattctgattatatttcataatgtgtatttgtcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgt-gaacaatttgcacagcaattttcagttttgca--ctttctgccaatatctggaaatgtg-ttttagttctgt-gataaaactttgttcattt--gacttattttcggttacag
|||||||||||| || ||||||||||| || || || ||||| || ||||| ||||||||||||||||| ||||| || || ||||| || || || ||||| |     |||   |     ||  ||| | ||||  ||||  |   |  | |  ||   || | | |   |||| | |   | |||| | || |   | || |||| | |     
CTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCAATAGATATATGGTCAGCTGGGTGTGTTCTTGCAGAGCTACTCCTTGGTCAGgttggtttcttttttctatggttgacagatctgcaaacttttggtttagttatttaagcatgatgtcatcactgttgctgtgattttgattatcttgtatttgtttttgctag---

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggttacag
||| || || ||||| ||||||||||| || || ||||||||||  ||||| || |||||||||||||||||||| ||||||||| | ||||| || |||||        | || |         | |  | ||| |  |   ||| | ||   ||||| ||     || |      |  ||||  || |  |                
CTATCGTGCCCCTGAGCTCATATTTGGTGCGACGGAGTATACAAGTTCAATAGACATATGGTCAGCTGGTTGTGTTCTAGCTGAGTTGCTTCTTGGACAGgttggttgccttcata--------taatgattcacctaatat-aatgtatg---atgtgattctaacctcttg---gatcttgtgtatgtatcag--------------

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G472625_T02 (Zea mays), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttc-tgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggttacag
 || || || || || ||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||||| ||||||||| | ||||| || |||||        | || |  |||  | |   |   | |||  | ||   || ||   |  |  | || |  ||||||   |   | ||    |     || ||  ||  |||
TTATCGTGCTCCAGAGCTCATATTTGGAGCGACGGAGTATACAACTTCAATAGACATATGGTCAGCTGGCTGTGTTCTAGCTGAGTTGCTTCTTGGTCAGgttggttgcattcata-taatgattaacctaatatttttgtacctcgatttgaccaaatcatgta-tggtgtgattctaacctcttggggtcttggatcttatgtatcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtg-----------------------aacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgtt-ttagttctgtgataaaactttgttcatttgacttattt--tcggttacag
||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||| ||||| |||||| | ||||||||                        ||  |||   ||  ||||| |    | |  | ||||  | ||    || ||||||  | ||  || | ||  |    | ||||   |  |   | ||   |  || |||
CTATCGAGCACCAGAACTCATATTTGGGGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtcattgatgtgttttcattaattattgttactacaattctattatataaattttccacaaaatgatgtaaatgttctgttgattatctggcacccatgtgttatctaaaacaaattgaacttttgcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactt-tgttcatttgacttattttcggttacag-----------------------------
||| || || || ||||| |||||||| ||||||||||||||||  ||||||||||| ||||||||||| |||||||| |||||||||||| | ||||||||       |     |    |||||| |  |     || |  | || |      || ||  |    |     || ||     |||||  || | |  ||| |    |                                
CTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtg--tcattgatttgttttcattaattattattattactatgtactattatatgaatctactgcaaaatgaagtaaatgttctcttaattattttccacccatgtgttatctgaaataatttaaacttttgcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtg------aacaatttgc--acagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtga-taaaactttgttcatttgacttattttcggttacag---------------------
||| || || || ||||| |||||||| ||||||||||||||||  ||||||||||| ||||||||||| |||||||| ||||| |||||| | ||||||||       |   |||||    ||  |||| | | | ||  ||| | | | | ||| || |  |       | |   || | |      ||  | ||||  |    ||  | |  | |                     
CTATCGCGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGgtttgtgtcattgatttgttttcatgaattattattatt--actatgtactattatatgaatctaccacaaaatgaagtaaatgttctcttaattattttccacccttgtgttatctgaaacaatttaaacttttgcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G29200.1 (Glycine max), 5'ss of exon 6
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaata-tctggaaatgtgttttagttctgtga-taaaactttgtt-catttgacttattttcggttacag
|||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||| | ||||||||  |   | |         | ||  ||| |  |  |  ||  |||| |||   | |   |   | ||   ||  ||   |  | |  ||    | |    ||   ||| ||
CTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGCCAGgtttatgttat---tgcttttcttttgttattaaaatggtgtaaatagtctcatattaaataacaatttactgcctagtgccatctgacacacaaatggaatttttttaaag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactt---tgttcatttgacttattttcggttacag-----------------------------
||| |||||||| ||||| ||||||||||||||||||||||| |  || |||||||| ||||||||||| ||||| || ||||| |||||| | ||||||||       |     |    ||||||  ||     ||  | | |  ||     | ||| |     |||   || | ||  |   ||||   |||| |   |  |    |                                
CTATCGAGCACCAGAACTTATATTTGGGGCCACAGAGTATACCAGTTCGATTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTTTGGGCCAGgtttgtg--tcattgatttgttttca--ttaattattgttactacaatactatattgtataaattttccacgaaacaatgtaaatgttttcttgattatatgccacccatgtgttatctaaaacaatctaaactttttcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G43620.2 (Glycine max), 5'ss of exon 6
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaata-tctggaaatgtgttttagttctgtga-taaaactttgtt-catttgacttattttcggttacag
|||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||| | || |||||  |   | |         | ||  ||| |  |  |  ||  |||| |||   | |   |   | ||   ||  ||   |  | |  ||    | |    ||   ||| ||
CTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGTCAGgtttatgttat---tgcttttcttttgttattaaaatggtgtaaatagtctcatattaaataacaatttactgcctagtgccatctgacacacaaatggaatttttttaaag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G12370.1 (Glycine max), 5'ss of exon 7
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaat-ttgc---acagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcgg--ttacag---
||| || ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||| | ||||||||  |     ||||    |    ||| | ||  | |  |     | |   || |  ||   |  ||||||| | |  |       || | || ||||  |     ||  ||   |   
CTATCGGGCACCGGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGCCAGgtttatgtcattgcttttcttttattgttagaatggtgcaaatagtct-cattttcaataattatttagttatttactgcctacatgct-atctgacacacaaatggaatttttgaag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 6
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggttacag
|||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||||||||| || |||||||||||||| || ||||| |||||||    ||| ||    |   ||    ||   ||   |||| || |  |  |  | |    |||||  | |   ||||| | ||                  
CTACCGTGCACCCGAGCTCATATTTGGTGCCACTGAGTACACAACTTCTATTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAGgtaaacaattctttcagtaaccagcttattcaatctccatgtgtatatttgcat-taggactca---ttgtgactatatcatgttcttatgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818413|gb|FQ409188.1|FQ409188
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349821008|gb|FQ404261.1|FQ404261
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110370230|gb|EC929161.1|EC929161
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTTTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110716958|gb|EE092396.1|EE092396
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|30255733|gb|CB971865.1|CB971865
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349814529|gb|FQ399169.1|FQ399169
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349813455|gb|FQ413689.1|FQ413689
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|352786166|gb|FQ478777.1|FQ478777
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349820741|gb|FQ408570.1|FQ408570
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGGGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349819490|gb|FQ413374.1|FQ413374
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351041679|gb|FQ455889.1|FQ455889
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349812888|gb|FQ410530.1|FQ410530
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349818025|gb|FQ408014.1|FQ408014
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTACCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351045211|gb|FQ451659.1|FQ451659
EST:     TTGATATGTGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349808118|gb|FQ403305.1|FQ403305
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|30136670|gb|CB922008.1|CB922008
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349818252|gb|FQ409027.1|FQ409027
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349819219|gb|FQ412113.1|FQ412113
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349809698|gb|FQ398305.1|FQ398305
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349820687|gb|FQ408516.1|FQ408516
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349823319|gb|FQ402518.1|FQ402518
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349811905|gb|FQ410702.1|FQ410702
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349815183|gb|FQ400338.1|FQ400338
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCCGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349820958|gb|FQ408666.1|FQ408666
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351015241|gb|FQ445525.1|FQ445525
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110727667|gb|EE104690.1|EE104690
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349819618|gb|FQ413502.1|FQ413502
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349820569|gb|FQ404064.1|FQ404064
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351045218|gb|FQ451666.1|FQ451666
EST:     TTGATATGTGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110726198|gb|EE101771.1|EE101771
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAACTTCTTCTAAGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349812635|gb|FQ409794.1|FQ409794
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349820534|gb|FQ404029.1|FQ404029
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|349827560|gb|FQ422428.1|FQ422428
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCCTGGAGAGAATGCAGTGGACCAGCCTTGTTGAGATTATCA
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCC-TGGAGAGAATGCAGTGGACCAGC-TTGTTGAGATTATCA
EST: gi|349820352|gb|FQ403968.1|FQ403968
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|352790221|gb|FQ481420.1|FQ481420
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|351023667|gb|FQ448218.1|FQ448218
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
EST: gi|110391404|gb|EC956378.1|EC956378
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCA
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCA
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAG                         CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatt ... tcggttacagCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGgtgaacaatttgcacagcaattttcagttttgcactttctgccaatatctggaaatgtgttttagttctgtgataaaactttgttcatttgacttattttcggttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT