Sequence
atgc intronic sequence ATGC exonic sequenceGGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatatagttgataactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgcagtccatcagcttgacttctgttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G44940.1 (Glycine max), 5'ss of exon 7
GGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagata-tagttga--taactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgcagtccatcagcttg--acttctgttc------------------------------------------
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GGAAAAATGAGCTGTTTGATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGgtaagctaacatctgatttagaatggagaaacataactgtgtacataaccccctttttgttcattacattccgtgtatgtgtgtattgtgttgttacaggtatttggtcaactatttcctgaatgtaattttgctattttcatgtag
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G73110.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatatagtt------gataactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgc--agtccatcagcttgacttctgttc
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GGAAAGATGAGTGTTCTCATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGgtaaataatgtcaaccccagataactttgagctatgttgt--gactctgcttttgatccgcaaagattatcataactgaggttttggctcttggtttag---------
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ31275 (Selaginella moellendorffii), 5'ss of exon 6
GGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatatagttgataactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgcagtccatcagcttgacttctgttc
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GGAAAACTGAGCTGCCTGATGATCAACGATATTGATGCTGGCATTGGGCGATTTGgtaggcaagtgcaaattgttgtcaggggaagt-ttattttggtttgactcacggtgcag-----------------------------------------
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ34330 (Selaginella moellendorffii), 5'ss of exon 6
GGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatatagttgataactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgcagtccatcagcttgacttctgttc
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GGAAAACTGAGCTGCCTGATGATCAACGATATTGATGCTGGCATTGGGCGATTTGgtagg----------caagtgcaaattg--ttgtcagg-ggaagtttatttttgtttgactcacggtgcag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690141|gb|EC948450.1|EC948450EST: GATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTG GAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGA
genomic: GATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatata ... tctactatagGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGTTGGGACTCTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGgtgagatatagttgataactttgatttgaattgctggatggaaatgctgtgttgtatagtttgtgttttccaatgcagtccatcagcttgacttctgttc
- - - - - GCTGTT
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa