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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g04810.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag
 ||||| |||| ||||   ||||| || || |||||||||||||| || || ||||||  |||||| ||||| || || ||||||||||| ||||| ||||| || | |    | | | ||  |  ||    | |  || | ||   | ||      |   |  ||  ||  ||||||            
CACACTAGATGGCCATTCCAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGATCGACCATACCTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttgtcataagcactgaattgta--ctcctgtgatcatgtctgtactctgtacactgatgacattattgatcaaatcag----------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtct-gccgttgataattattt--tcaagctgtgttta-gtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag------------
|||  ||||||| ||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| | |   |   |  ||  ||  || | |||  | || | |||||         | | |   | || |      |  |||       ||| |             
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgat----------aattattttcaagctgtgttta-gtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag
|||  ||||||| ||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |    || ||          |  ||| | |  |  | |   | | |   |  |   |  ||  || | |||   ||||||  || | | | ||| |||
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataa-catggatgaaacttacgaat-cag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataatta---------ttttcaagctgtgtttagt---atttatgcggtttg---atagaaggaaatgttcatg--gacaaatcctccaaatgcag
|||| ||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| || || |||||||| || |||||||||||||| ||||| ||||| ||   |  ||  |           | ||||   |   | || |    |||      ||||   || ||  | |||  | |||  || ||| |||   ||| |||
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaat-cag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctg----ccgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaaggaaatgttcat-ggacaaatcctccaaatgcag------------
|||  ||||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || || || || |||||||||||||| ||||| ||||| ||    |  ||     || |||||    |    ||    || ||  ||||   || | |   || |  || |||   ||  | | |||  |             
TACGTTGGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTGATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgtttttttcctcttcatcttccctttaatttggttgcctatatgtgtatatggataggaattattatgccaataaaacctttgaaacag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgc------cgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaag-------gaaatgttcatggacaaatcctccaaatgcag---------------------------------------
|||  ||||||| ||||  ||||||||||| ||||| || |||||||| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||       | ||  |  || ||| |||| ||| |     || | || | ||  ||  |         | | ||||  |  | |  | |    |  |                                          
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataattattttca-agctgtgtttagtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag
|||||||||||| ||||||||||| || || ||||| ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||||||||||| |||   || | |   ||   | | ||||| || |  |       |  | ||  |     | | || |  || | |  | |   | |||
TACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGgtatgcttctggttaagcttccaatatctgtgctttgattcccctgagaattatgtatttgca-gatcgtttactagtggtactttttcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgat--aattattttcaagctg---tgtttagtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag
|||| ||||||||||||||||||| ||||||||||| ||||| || || || |||||||| || ||| |||| || || ||||||||||| ||||||||||| ||||     |  |||  | ||  || ||     |||    |  |     | || |   |||  || | | | |   |||      ||| |||
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttac-tagttgaatttcgtgaat-cag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 7
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataattattttcaagctgtgtttagtatttatg-cggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag--------------------------------------------------------------------------------------------------------
 || || || || ||||||||||| || |||||||| || |||||||  || ||||||  ||| ||||| || || ||||| |||||||| ||||| |||||      || ||  || | |        | || | | |  | | |  | | |  ||| ||  || |  |  | |     ||   ||                                                                                                            
CACTCTAGAGGCTCATCAGAAAGGAGTGAATTGTGTCGAATACTTTAGTGGTGGTGATCGACCTTATCTCATAACTGGTTCAGATGATCAAACTGCCAAGgtaatgactttatc-ttgtctgttgctaatcttaattctccaggtcaatataactgaaagacttggttctata-aggctttcgggatttgcatgagtatcatttttgacatagcatgacttactgtaatccatgttcgattaaatgtattctgatgtgtagttcagtaacttacaattttttccttgtcgggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386870|gb|EC951502.1|EC951502
EST:     GCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAG                         GTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTTGAAGGCCACACA
genomic: GCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgtt ... ccaaatgcagGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTGGAAGGCCACACA
EST: gi|110388767|gb|EC953553.1|EC953553
EST:     GCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAG                         GTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTTGAAGGCCACACA
genomic: GCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgtt ... ccaaatgcagGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTGGAAGGCCACACA