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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag

Basic information

species Vitis vinifera
transcript Vv09s0002g04680.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 10
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaa--tagatt--ctgtattgtttgtaaattgattattcttcaaaatgctcc---cctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
    || |||||||| || |||||||||||||||| ||||||||| |||  ||| | ||| |  |||||||| || || ||  | || || |||||||||||     ||| |  |  |  | ||| | |||   ||| | |    |   ||     |  |||||||| || || |   |           |||  | |  |                                                            
CTCTGTAGATCAACTGGTGTATTGTATCAATAGTTTCAGAGAGGCTGCATCGTCCAGTGACCAGAAGTTTGACCATATCGACATATCTGAGAAACAGAAGgtgggtcagaatgacattcctcttttttaatcatttagtttcagtagcactgtggactaagcctctggac-actaggctgtggaaggctcatggggtaggg------------------------------------------------------------

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 8
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt-ctgtattgtttgtaaattgattattcttcaaaatgctcccctagcct--ctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
|||  ||||||||||||  |||||||| |||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||  ||   || ||||| |||||||| | || |||   || || |  ||   || || |||    |   |   ||||     | |    ||  | ||  ||  |                                                                          
AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggttactgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcag----------------------------------------------------------------------

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 8
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt-ctgtattgtttgtaaattgattattcttcaaaatgctcccctagcct--ctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
|||  | ||||||||||| |||||||| |||||||| ||||| || |||||||| ||||||||||| || || ||||| ||  ||   || ||||| |||||||| | || |||   | | ||||| |   ||| |  |||   |   |   ||||     |      ||| | |   ||||                                                                           
AGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggttgctgccgtttctgtaagtcttttaat--tcatggttgccatttagctgaaattgttttccattttgtttgcag--------------------------------------------------------------------------

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 7
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagattctgtattgtttgtaaattgatt------attcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
  |  | || ||  |||| |||||||| |||||||||||| | |  |||||||||||||||||||  ||||||||||| ||  |   ||| |||||||||||||| |  | |  ||| | | |   ||| ||       |  ||   |||    |   | ||  | | |   | ||||   |  |                                                                           
TATAATCGAACAGTTTGTCTATTGTATAAATAGTTACAGACAAGTTGCAATGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcatgtcaattttctttcccttgtttctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctag--------------------------------------------------------------------------

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
 ||  ||||||| |||| ||| ||||| || || |||||||||||||| ||||| | ||||||||||||||| ||||| ||  |  | || || || |||||||||  ||   |     ||| ||    |  |    ||  ||   || |  || ||  |    |    |  |  |      | ||  | || | || |                                                       
GGTCATTGATCAGCTTGGTTACTGTATTAACAGCTACAGAGAGGCAGCTATGTCTACTGATCCCAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAAGgtaataatttggctcaatcttggaagcacaaaaaaaatcttaaatttctc--aggcttggggaaattgtttgatgttttgttgttgt-gaaatgattaag------------------------------------------------------

upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G79920.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagattctgtattgtttgtaaattgattattcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
 ||  ||||||| ||||  || ||||| || || ||||||||||||||  |||| ||||||||||||||||| ||||| ||  |  | || || || ||||||||| |||| |  |  | |  |||  |         || ||     |   |   ||  |  |     || |||||    |  ||||      ||||    | | ||||  |  |                                      
GGTCATTGATCAGCTTGGCTACTGTATTAACAGCTACAGAGAGGCAGCTGTGTCTAATGATCCCAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAAGgtaata-attcggc-tcatctcgaaagcg---------cagaacaaatcttaaatttcacaggcttgggta-aaatg----gtttgaaatgtgttttgttcttgtgcaatgattaag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245466|gb|CD711285.1|CD711285
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAA                         GTCTTGAGTGAGTGTGTGGA
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGA
EST: gi|110721835|gb|EE097540.1|EE097540
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAA                         GTCTTGAGTGAGTGTGTGGAAGCAAAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
EST: gi|110364620|gb|EC928007.1|EC928007
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAG                         GTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
EST: gi|110699605|gb|EE076751.1|EE076751
EST:     TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAG                         GTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG
genomic: TGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt ... tttattgtagGTCTTGAGTGAGTGTGTGGAAGCAGAGGCCTGGTTAAGGGAGAAAAAGCAG