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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatctgactttgaatgcctcttgctttcactttatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02670.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 6
AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatc-tgactttg-aatgcctcttgctttcactt-tatcag---------------------------------------------------------------------------------------
| ||||| |  || | |||||| ||||  || || |||||||| ||| | |||||| |||| |||||||| |||||||||||||| || ||| | ||||||| |||  ||| | | | ||   |   | |  |    | || |    ||| ||  | |||  ||  ||||| || | |||                                                                                        
AGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGATGGCTCTGAGATTATCCTTGACTTGTTCTGTGGAACCGGAACCATTGGTCTTACCCTTGCTAGAAGgtaaat--tttctcactatt--atcatgctgttggagagcagttgctactatgtgaggccattttttttcatttgtttcaagtcttagcacaaaactttgagcattcgtcattcggttacccatttattgaaaagcatgattagtagatgttcttctgatttgaccag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatctgactttgaatgcctc-ttgctttcact-ttatcag-------------------------------------------------------------------
| ||||| ||||||| |||||| |||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||| | ||  || || ||||||   | ||||  |  ||| ||  ||   | |     ||   ||||  | |||  |  |  ||||||||    ||| ||                                                                    
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 7
AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatctgactttgaatgcctcttgctttcactttatcag----------
| ||||||||||||||||||||  | |  ||||||| ||| |||||||| |||||||||||||||||||| || ||||| ||||| || ||| | ||||||| ||| |||  |     |   ||||   || |||     || |||      ||||    |   ||    | |  ||           
AGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgt-aatctttgatctccatctggttttagtattttaggataaactgtgaagcaatgagattaatttcttgtcttccaattctgaacag

upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G02550.1 (Glycine max), 5'ss of exon 6
AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatctgactttgaatgcctcttgctttcactttatcag----------
| ||||||||||||||||||||  | || ||||| ||||| |||||||| |||||||||||||||||||| || || || ||| | || ||| | ||||||| ||| |||  |     |   ||||   || |||     || |||      ||||    |   ||    | |  ||           
AGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTTTGACGCTTGCAAGAAGgt-aatctttgatctccatctggttttagtattttaggataaactgtgaaacaatgagattaatttcttgtcttccaattttgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360458|gb|EC923573.1|EC923573
EST:     CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAG                         GGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
genomic: CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttt ... actttatcagGGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
EST: gi|30326526|gb|CD009788.1|CD009788
EST:     CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAG                         GGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
genomic: CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttt ... actttatcagGGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
EST: gi|30325919|gb|CD009181.1|CD009181
EST:     CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAG                         GGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
genomic: CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttt ... actttatcagGGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
EST: gi|30326234|gb|CD009496.1|CD009496
EST:     CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAG                         GGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
genomic: CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttt ... actttatcagGGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
EST: gi|37189974|gb|CF609323.1|CF609323
EST:     CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAG                         GGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC
genomic: CTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttt ... actttatcagGGTAAGGCATGTTTATGGCTATGAAGTAGTGGCTCAAGCTGTTTCAGATGC