Sequence
atgc intronic sequence ATGC exonic sequenceTCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaatat---atttgctaaattgacct-------
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TCAGCAGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAACCAAAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttccagtg-------tgagata---agctaggcatgctgtggatttgccatttggcttccagttagttttaaatgttaaacacacgaatgctatctaattggt
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatact---ctgtgtgtatt---ttgtgt-gtcttttccaaggcacttttaatatatttgctaaattgacct
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TCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATTAGCAACCAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGgtataactttcaa-----atcttcaaactcttagctatgctgactagtgagtattaacatatacagccttttctcacacaatgggaaaaaaatg--cagtcctatat
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattatt-actaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaat--atatttgctaaattgacct
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TCAGCAGATGATCTGCGTATAAATCTATGGAATTTGGAGATAAATAACCAGAGCTTCAATATTGTTGACGTGAAGCCTCCAAACATGGAAGACCTAACGGgtaactccatttagtaccttatttcttacatg-atttgtgctcaactttgaattaatgtactgcagcatggataaaattgattgatggaagctttcttaat--
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtg-tgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct------
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TCAGCAGATGATCTGCGAATAAACCTTTGGAATTTAGAAATTAGCAATCAGAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaacttttttcag-------tctgataactaattgcggtgtgcactgagcttcctgtttcctgtaaacattaatgttatcagactaggtagattcacagtcaagt
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaa--tatatttgctaaattgacct
|||||||||||| |||| ||||| |||||||| |||||||| ||||| ||||| ||||||||| ||||||| |||||| |||| ||||| ||||| ||||||| || | | | || | | | | | || | ||| | | | ||| | | | | || |||| | || |||
TCAGCTGATGATTTGCGGATAAATCTTTGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACTGgtataacttccaa-acctacaaagtatttcctatctgtgctgattatgtgtgtgataggtcatagatgtgaaaataagaaaatatactcaagaagttgcaa-
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 8
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaatta-ttactaattatcttct-gatattcagtt---atactctgtgtgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct
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TCAGCAGATGATCTCCGAATAAATTTATGGAACTTGGAAATAAACAGCCAGAGCTTTAACATTGTTGATGTGAAGCCTACAAACATGGAAGATCTAACAGgtaattccacttagtcataatttttttaacatttatcctaagtgttgcaaatttacttgatgaagttttgccttccca--tttaacaaaaaag--agattgcaa-
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattatta---ctaattatcttctgatattcagttatactctgtgtg-tattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct
|||||||||||| |||| ||||| || ||||| |||||||| ||||| ||||| ||||||||| ||||||| |||||| |||| ||||| ||||| || |||| || | || ||| | |||| || | | || | |||||| || | | || | || | ||| | || ||| |
TCAGCTGATGATTTGCGGATAAATCTATGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACCGgtataacttctaaacctacaaactttcttatctgtgctgattatgtgtgtgataggtcataggtgtgaaagaaaatatacataagggaac----aagttgtttt
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaat-tatcttc-tgatattc---agttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct
|||||||||||| | |||||||| ||||||||| ||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| || | |||| | ||| || || | | | | | | |||||| || ||| || | ||| | || || | | || | | | |
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttt-tcactattgtatttttatgctgtgctgaaactgttctctgttgataacttg-gtataattt---atccatttaaagggcaaaacttacagtaccat
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagt-tatactctgtgtgtattttgtgtgtcttttccaaggcactt--ttaatatatttgctaaattgacct--
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TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcc----tttagtgtatacattatcagtatcagg-gtaaaactctaaaattaattaatttatatagttcgagaaataattgca
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcactt--ttaatatatttgctaaattgacct--
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TCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataaaaaaaattatcctttatt--gtta-acattattggtaacttg-gtaaaacactaaaattaattaatttatatggtttaagaaataattgca
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaat-tatcttc-tgatattc---agttatactctgtgtgta-ttttgtgtgtcttttccaag-gcacttttaatatatttgctaaattgacct
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TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACCGgtaagttt-tcactattgtatttttatgctgtgctgaaaatgttctctgttgataacttggtataatttatccatttaaagggcaaaaacatatatacagt------
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 9
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattacta--attatct---tctgatattcagttatactctgtgtgtattttgtgtgtcttt---tccaaggcacttttaatatatttgctaaattgacct------
|| ||||||||| ||||||| || |||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||| |||||| ||||||| | ||| |||||| ||| |||| | || | || |||| || || | | | ||| ||| || | | |||
TCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGgtaagccttggtctactgttatctcagtctaatatgttctcttatacggtacccatttatcatgcaattggatgcgatatccttcgaatttacg-accatattcgttcatgcag
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatac---tctgtgtgtattttgtgtgtct-tttccaaggcacttttaatatat----ttgctaaattgacct----------------------------------------
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TCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTAGCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGgtatgctacttctcctattttgttagatgttactttgtatggtcttaccattgattcatatgtcaacaacctccttacttttattatctatttttttcacgtttactgcttgtcgagcatgcttctaaatgctacatggtctgtgcag
upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S10_312V6.1 (Physcomitrella patens), 5'ss of exon 7
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaa---ttattactaattatcttctgatattcagttatactctgtgtgtatttt----gtgtgtcttttccaaggcacttttaatatatttgctaaattgacct---------------------------------
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TCTGCTGATGATCTGAGAATTAATTTATGGAACATGGAGATCAGTGACCAAAGTTTCAATATTGTTGATATTAAGCCTGTCAATATGGAAGACCTTACAGgtgaatgcctgatcatgatgtagctctctttaatcagtatttttctttaattaacatcaaaatatacttgttattgtgcaattattggatgatattttgcatgatcattgttgactgtattgctggatttgtcacatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714603|gb|FC064207.1|FC064207EST: AAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTG AGGTGATAACATCAGCGGAGTTTCACCCTACCCATTGTAACATGTTAGCAT
genomic: AAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattat ... cttcttgcagAGGTGATAACATCAGCGGAGTTTCACCCTACCCATTGTAACATGTTAGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga