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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttctagttcttttaaatgactgtgttccttagtacttgattgaaaatacttaaatctgatgatgctttcttttcggtgggtttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02440.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 8
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttc--tagttctt-ttaaatgactgtgttccttagtacttgattgaaaatact--taaatctgatgatgctttcttttcggtgggtttcag---------------------------------------------------------------------
 |||||  | |||||| ||||||| || || ||||||||||| || || || ||| ||||||||||||||||||||||||| ||  | | |   ||  | || || | | |  ||  |||    | || |  || | | |||      | |||  |     | ||  ||| |    |    | |   |    |    ||| |                                                                      
ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttattctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttttattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 9
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttcta-gttcttttaaatgactgtgt-tccttagtacttg-------attgaaaatacttaaatctgatgatgctttcttttcggtgggtttcag
 ||||| ||||||||  |||||||   ||||||||| ||||| || || |||||| |||| ||||||||||||||||| |||||  | |||| |||  | || | ||| |      |  |    |||  ||| || || || ||   || |         || |  | |  | |||   |   || ||   | |     | ||||||
ATTCATTCACATACCGGCAGAGCCTAGTGCAATTGTAGAGGATAATAGACCACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGgtaacgaactaaccaaatatatacttatgtgattgcgtctcttttccacctttatccatgttcatgacaaatgaattcaagtctgattctctgtacaacgatttcag

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 8
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgagg--aaattcttctagttcttttaaatgactgtgttccttagtacttgattgaaaatacttaaatctgatgatgctttcttttcggtgggtttcag
     | ||  | |||  |||||| ||||| ||||||||||| ||  |||| ||| |||||||||||||||| || ||||| ||| | |||    |  | |  | |    || ||| || ||| ||      | | | || ||   || || |                                               
-----TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgcatccttgtatttcctt------attttttttctctttattttag----------------------------------------------

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G01380.1 (Glycine max), 5'ss of exon 2
GTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaattcttctagttcttttaaatgactgtgttccttagtacttgattgaaaatact----taaatctgatgatgctt--tcttttcggtgggtttcag-------
          || |||  |||||| ||   |||  |||||||  ||||||||||| ||||||||||||| || || |||||||| ||  ||  | |||| || |  ||||      | |  | |   | || |     ||  |   || | ||   || | |     |  | || |   | ||   |    |      ||           
----------ATGCCACAAGAGCCTCCAAAAATATTGGAGGATGAAAGGCCACCATCTTCATGGCCTTCTAATGGCAGGATAGAGTTTAAAGCTTTGAAGgtaaacaaatgaaaagattaatatagtaggaattctaaccccatccctcggtttgtaacattattccacttttggtacagtttggaccaaccaacacattgttattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110694968|gb|EE072449.1|EE072449
EST:     CACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAA                         ATAAAATACCGCCCTAATGCTCCTCTAGTTCTCAAAGGAATTACTTGCACG
genomic: CACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAgtgaggaaat ... tgggtttcagATAAAATACCGCCCTAATGCTCCTCTAGTTCTCAAAGGAATTACTTGCACG