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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag

Basic information

species Vitis vinifera
transcript Vv09s0002g02200.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgtta-tagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag
||||||||| ||||||| |||||||| ||||| || ||| |||||||||||||||||||| ||| |||| |   |  ||   ||||  | |  | ||||| |     |||  |   | || | |     | |    |         ||   |  || |      | |        | ||||  ||||   ||    ||||
GTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGgtgagggcttgctagggtgcaatttaggctgttagtttcctgagaaactaccagcagtcctactatgaactccaaatccaaatctatgtactgcaactaac--------atgtgcccatttcggtttacaacag

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G20610.1 (Glycine max), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtg-ctgattttttttgtatacag
|| |||||| ||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||  |  ||           |||  | ||||  |    |  ||   | ||||    ||| ||||||| |   | |||     ||| |    |  | ||   || | |||  | |  |||    | || ||
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGCTGTTTGTCATACGTGATAAAACAAGGgtgtgtaatagct----------gtttattattattatttttgtaattatttgtat----gttatatgtttttaattctaa-----atacttttatttgttg---ttgatgtggttaacctttcccttttatag

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag
|| |||||| ||||||||||||||||||||||||| ||| ||||||| || || ||||||||||||||||||  |  ||  |      | |||  ||| ||  |  |   | ||  || |  |||| || ||  |   |||||||      | | || | ||| ||| | ||||   |  |                  
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatt--tttaattctaaatacttttgttt------gttgttgatgtg-gctaacctttcccttttatag--------------

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 8
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagcta-gtattttagttgtatgtttgtttgtttaagtg-agatattaaggtgagctgaactttaagtgctgattttttttgtatacag
|| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| ||||||    |    |  |||  |  ||| | | ||| | | |   ||   |  || ||| | || | | || |||| | ||  |  |  || || | || | | ||| ||      | ||               
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgc--tgcttgttttgataattctaaatatttttctgtgtttcatttttgtatt-gtttatatatcttcatttactatgatgtgatcaaccttttccattcatag-------------

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatag-ctagtattttagttgt--atgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag
|| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| ||||||    |    |  |||  |  ||| | | ||| | | |   ||   |  |||||| | || |   ||||| | | | |   |    |||   | | | ||   | ||  ||                     
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgc--tgcttgttttgataattctaaatattttcctgtatttcattttttattgtttatatatctttatttactatgtggttaaccttttcctttcgtag-------------------

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G13870.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgt-tttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag
||||||||||| ||||||||||| || || ||||||||||||||||||||  | ||||||||| |||| ||  |||   | || || | | | | ||  |  |   |  |        | |||| | ||||| |      |  ||  || |  ||   |                                         
GTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAAAACACGGgtatgcatttgggttttctgtcctttatcattctgaatctctgg--------attattgtggttgttt-----ctaattccagggtaattgcag----------------------------------------

upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttat-ttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag
|| ||||||||||||||||||||||| ||||||||  || ||||||| || || ||||||||  ||||    | |||   || | | || | |   | || |         |||   ||  |  | | | |||  |   || || ||     ||| ||      ||                                  
GTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGGgtacactctcttcttttttctttgtatcattcttcttacattgcagatttgtaacagctaactggtacatacatt-gtctattgatgattttggctgcag----------------------------------