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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatgagaatacaaaccatgctcaatttactgttttatgattgaatgttttgtttatcaaatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g01800.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G015132_T01 (Zea mays), 5'ss of exon 5
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatgagaatacaaaccat------gctcaatttactgttttatgattgaatgtttt--gtttatcaaatgcag-----
  || ||| |||||||| | ||||| ||||| |||||||| |||||||||||||||| || | | || |  ||    ||  | ||  |||         ||  |||  |   |  |||   ||  ||| ||   | | |  |||         
ACCTGCCTCCACATCAAGAAATTGGGATGCCGTCTCTTTCACCTACAATGACTGAGgtatattcattgcccaaaaattgttagtatgaactgaatgatagccgaatggaaactcatattgctgcttgtctttattctgtataatttcttgtag

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 1
--------------------------------------------GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctt-tctgaagct-atgagaata---caaaccat-gctcaatttactgttttatgattgaatgttttg--tttatcaaatgcag-----
                                              || ||| |||||||| | |||||||||||||| ||||| ||||| |||||||||| || |   ||  |  || || || || | |     ||  || ||| || | |      |||   ||  ||||||   | | | |||| |       
TAATCCCTTTGACATTCTGTATTAACATGCTGTGCTTATTCCAGACCTGCCTCCACATCAAGAAATTGGAATGCCTTCACTTTCACCTACCATGACTGAGgtatatttgttacccaaaactcattagtacaacctgaataatagctgaactgaaaccagtattgctgcttgtttttattctgtaaaattctttgtag

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 6
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagct-atgagaatacaaaccatgctcaatttactgttttatgattgaatgttttgtttatcaaatgcag
 ||| ||  |||| ||  | ||||||||||||||||| || ||||||||||| ||||    | | |||||||| || |||||| | |     ||  |   |    || ||| |  |  | | || |   |   | | ||||
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacttttctgaatcttatgagattgctg--tatagtgggtca--tgatttctcctaaattattctcactg--atacgcag

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatgagaatacaaaccatgctcaatttactgttttatgattgaatgttttgtttatcaaatgcag
 ||| ||  |||| ||  | ||||||||||||||||| || ||||||||||| ||||    | |  || | |   ||||||| | |      ||   | |      |  | |     ||  | ||    || | || |||
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattgc------tgtatagtgggtcatgatttctcctaaattattcccaatgatattcag

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatga-gaatacaaaccatgctcaatttactgttttatgattgaatgt-tttgtttatcaaatgcag
 ||||||| | |||||| |||||||||||||||||||||| || |||||||||||||||||| ||| |    | || | | ||| |  |||   | | | | |  | |  |   | | ||  | | |||| |  || | |||
ATCTTCCTCCTCATCAAGAGATTGGAATGCCTTCTCTTTCGCCAACAATGACTGAGgcatgtacctctgaatacctcttacgaaaattaacatggtttattgttttatcattctactaaagatatctgttga--aacttcag

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G54220.2 (Arabidopsis thaliana), 5'ss of exon 6
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatgagaatacaaaccatgctcaatttactgttttatgattgaatgttttgtttatcaaatgcag
 ||| ||| | |||||| |||| || ||||||||||| || || |||||||||||||||||   |||| |  | || |  ||  | ||   |||  |  ||||    |||||| |  |||    | |||   |  |  ||
ATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTCTCTCGCCAACAATGACTGAGgcatggatctttatttacctctt-gatcaaaacttatgtccgttttatc--tttatgttctaataagctttttccaatttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46917986|gb|CN547315.1|CN547315
EST:     CTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAG                         GGTAACATTGCGAGGTGGTTGAAGAAAGAGGGTGATAAAATCTCTCCTGGT
genomic: CTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcct ... tcaaatgcagGGTAACATTGCGAGGTGGTTGAAGAAAGAGGGTGATAAAATCTCTCCTGGT
EST: gi|110723928|gb|EE099311.1|EE099311
EST:     CTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAG                         GGTAACATTGCGAGGTGGTTGAAGAAAGAGGGTGATAAAATCTCTCCTGGT
genomic: CTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcct ... tcaaatgcagGGTAACATTGCGAGGTGGTTGAAGAAAGAGGGTGATAAAATCTCTCCTGGT