1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttcttttttcttttgatttttcaatttttttttccagacagatattgtttcttctaataattttctacaatattttatttcttttgttcag
species | Vitis vinifera |
transcript | Vv09s0002g00880.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GACGCCCAAAGTGCTATCAATGACATAACCGEST: gi|33409957|gb|CF215584.1|CF215584
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: TGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACATAACCGEST: gi|161716028|gb|FC065534.1|FC065534
genomic: TGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCA-TCAACAG GATGCCCAA-GTGCTATCA-TGACATAACCGGAAEST: gi|161705670|gb|FC055790.1|FC055790
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCGGAA
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACATAACCGEST: gi|110694202|gb|EE071104.1|EE071104
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACATAAACCGEST: gi|110696392|gb|EE072470.1|EE072470
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAA-CCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACATAACCGEST: gi|351031018|gb|FQ439054.1|FQ439054
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GACGCCCAAAGTGCTATCAATGACATAACCGEST: gi|161707025|gb|FC055133.1|FC055133
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACATAACCGEST: gi|77582239|gb|DV220083.1|DV220083
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GATGCCCAAAGTGCTATCAATGACEST: gi|110357183|gb|EC920553.1|EC920553
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGAC
EST: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG GACGCCCAAAGTGCTATCAATGACATAACCG
genomic: AGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttctttttt ... ttttgttcagGACGCCCAAAGTGCTATCAATGACATAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttcttttttcttttgatttttcaatttttttttccagacagatattgtttcttctaataattttctacaatattttatttcttttgttcag
- - - - - - - - - - - - - - - - - - - AAGAGG