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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacattttcactctctcaataaaaacttgtaacattctgtaagactgaggaagcctttgttatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g00380.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G05100.1 (Glycine max), 5'ss of exon 6
GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacat---tttcactctctcaataaaaacttg-taacattctgtaagactgaggaagcctttgttat-cag
||| ||||| ||||| ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||| || ||||||||||||||||||||||  | ||||||      ||   | |  || | | | |  ||   ||  |  | | | ||    ||  |      ||  | | |||
GGGAACTGTATGTGAGAGGTCTCATCTCTTTCGCATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcagtagtttttacagttgttgtcattattactgttcag

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G01590.1 (Glycine max), 5'ss of exon 7
GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacattttcactctctcaataaa-aacttgtaacattctgtaagactgaggaagcctttg-ttatcag
||| ||||| ||||| ||||||||||||||||| || ||||||||||||| |||||||||||| ||||| || ||||| || ||||||||||||||||||||||  | ||||||      ||    |     |   ||    |  | |  || |   |   || |  |  | | ||  || ||||
GGGAACTGTATGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcag

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacattttcactctctcaataaaaacttgtaaca--ttctgtaagactgaggaagcc---tttgttatcag-----------
 || ||||| ||||||||||| ||||||||||| || ||||||||||| |  ||||||||||| ||||| |||||  |  |||| ||||| || |||||||| || | | |  || |    | ||   | |   || | |    | | |||  |||  ||| | | || || |    |   |  |||            
AGGAACTGTGTGTGAAAGGTCTCATCTCTTTCGGATAAAATACTATGGTAGTTTTGATAAACCCTTGGGACGGTTCTTGAGAGATCATTTGTTCGATCAGgtgagttattttcttttt---tgttttgttttataagacatctatattacagcttcaataataattagaaacctaaatgcatgctcaaaactttttcag