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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag

Basic information

species Vitis vinifera
transcript Vv08s0217g00020.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 8
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatc-tagtgcacacaa-ttatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
|||||||||||||||  | |||||  ||||| |||||||||||||||||||||| ||  | ||||| || |||||||| ||||||||||||||||| | |    |||    | |||| ||        ||| || || ||  ||     |   | ||  ||    | |  || |||| |||| | ||                                         
GGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgctttgtga-ctttattt-------agatccccattgtcatatttttgacactgttcatgtctcacattcttggttattttttag----------------------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G07420.3 (Glycine max), 5'ss of exon 7
--------GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatc-tagtgcacacaa-ttatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
        |||||||||||||||  | |||||  ||||| |||||||||||||||||||||| ||  | ||||| || |||||||| ||||||||||||||||| | |    |||    | |||| ||        ||| || || ||  ||     |   | ||  ||    | |  || |||| |||| | ||                                         
CATAATAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgctttgtga-ctttattt-------agatccccattgtcatatttttgacactgttcatgtctcacattcttggttattttttag----------------------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 8
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
|||||||||||||||  | |||||  | ||| ||||||||||||| |||||||| ||  | ||||| || |||||||| ||||||||||||||||| | |            |  ||||   |||   ||| || || ||    ||| || |  | |||    |||| | |    | |||||   |     || |||| |                          
GGCTTTGGAAGAGAAAAGAGCTCGGTTAGGTTTAGTGGAATGTGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatattt---------gtgttgtgactttattagatccccattg----ccatattttttacac-tgtttatgtctc---acattcttggt-----tatttttcag-------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G43390.1 (Glycine max), 5'ss of exon 8
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccct--cttaacaagctttgttc--ttttgggagaacctcaatg-ggatccacatctagtgcac-acaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
|||||||||||||||  | |||||||| ||| | |||||||| || || ||||| || || || ||||| |||||| | ||||||||||||||||| ||||  |  |  |  | || |  ||   |  || |    | |  ||| |   |  ||| |  ||||  ||| |  |    ||  |                                                  
GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaaaaacttttgcccagtaggcataattaaatcctgtgttgtcatttatgtgcgccttcatgtcatgcattacattggttgcattacag-------------------------------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 8
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctc--ttaacaagctttgttc--ttttgggagaacctcaatg-ggatccacatctagtgcac-acaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
|||||||||||||||  | |||||||| ||| | |||||||| || || ||||| || || || ||||| |||||| | |||||||||||||||||  |||  |     |  | || |  ||   |  || |    | |  ||| |   |  ||| |  ||||   || |  |   |||  |                                                  
GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaacttttggccagtaggcatgattaaatcctgtgttggcatttatgtgagccttcatgtcatgcattgcattggttgctttacag-------------------------------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S80_199V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
 ||| | || |||||||||||||| || ||||| ||||| |||||||||||||| ||  | || || ||||| ||||||||||| ||| ||||||  ||    | || || | || |    |  | | ||   |||||      |   | | ||       ||  |     |   |||| |||   || ||   |||                             
AGCTCTAGAGGAGAAGCGGGCTCGTCTTGGTCTTGTGGAGTGTGTGAATCATGAACTGCTTCAGCCCTACCCCGTTCTTCATGAGAAGTCTGgtat-aactatttttcaccaactgtagaataatcgaagt-tctcaaaaattccattagcgagcctttggaaaaaaaaaat-atatatcctc---atatgctttttc----------------------------

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
 |||||||| |||||||| || || || ||||| ||||| |||||||||||||| ||  | || || |||||||| |||||||| || ||||||||         ||  | ||       |||||||      |||  |  | ||  |  ||  ||        |||||   ||| | | || |  || ||  |    ||||||| |      ||||         
AGCTTTGGAGGAGAAGCGAGCACGTCTTGGTCTTGTGGAGTGTGTGAATCATGAGCTACTTCAGCCGTACCCTGTCCTTCATGAGAAACCTGgtaa---------tttgcgag-------cttttggtg----ctcctttaggtcgtctcctgttgagtgggtctatctgaatggttgt-ctttggat-tgcga----aaagctgcagaaattgttga--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22007317|gb|BQ792351.1|BQ792351
EST:     TGTGAATCATGATCTTTTACAACCATACCCTGTTTTTCATGAAAAGCCTG                         GTGACTATGTTGCTCACATC
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATC
EST: gi|46917947|gb|CN547276.1|CN547276
EST:     TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTG                         GTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
EST: gi|37187910|gb|CF607261.1|CF607261
EST:     TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTG                         GTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT
genomic: TGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaacc ... ggctatgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGAT