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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttctatttatggattacaggcttaaattaatcctcatgttgtatttctataatagatccatatgtttagcaattgtgtctccaatattattagaactggccatttgacttttacatgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacag

Basic information

species Vitis vinifera
transcript Vv08s0058g01360.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttctatttatggattacaggcttaaattaatcctcatgttgtatttctataatagatccatatgtttagcaattgtgtctcca-atattattagaactggccatttgacttttacatgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacag
|| || ||  | || ||||| ||| ||||||| ||||| ||||| |||||||||   ||||| ||||||||  ||||||||||| |           |   | | ||     | ||  || |||   |   ||| ||| |   |||  ||| ||||  ||  | |   |    ||||| |                                                                              
GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaa-----------aaaaagttcaactacatatatattctc---taagattcctaaatccgatatataagtttcacatgtttacatttggatattgtag----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405593|gb|CF211220.1|CF211220
EST:     TATCGTGCAAGGTGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG                         CTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
EST: gi|29781753|gb|CB346482.2|CB346482
EST:     TATCGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG                         CTTCGGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
EST: gi|110390350|gb|EC955254.1|EC955254
EST:     TATCGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAG                         CTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA
genomic: TATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttc ... gtttgaacagCTTCAGGAGCTTTACGCTGTGAAATCAACAATGGAGGCTGTTGGAAGGACA