Sequence
atgc intronic sequence ATGC exonic sequenceTTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagcatatttaataatcaacaaaaactaatggttgtgaagtcattcgtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 6
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagc-atatttaataatcaacaaaaactaatggttgtgaagtcattcgtc
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TTTCAGTTCAGATTCTGGCCAAATAACAACAGCAGAATGTATGTCTTGGAGGGGGTTACACCATGCATACAATCATTACAATTACAGGCTGGTGATACAGgttaaatctcct-tggacatgatatcacctgttctttttttacaattttattactgatgcctgattacatataagcaatgattttcctattgcataccttc
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 6
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaatttta-gcat-atttaataatcaacaaaaactaatggttgtgaagtcattcgtc
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TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAGTCTTTGCAATTACAAGCTGGCGATACAGgtaaaacatcttatttccttggacatgatcataagcatctatttgcaagcacgcgcttcacttcttccttgattgaagtt--tgtttttaatactacctata
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 6
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagcatatttaataatcaacaaaaactaatggttgtgaagtcattcgtc---
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TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagcaat-ttagcatctatttgcaagcatgcattcacttctttcttgattgaagtttgtttttaatactacgtat--atggtatagctacttattatt
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G32810.1 (Glycine max), 5'ss of exon 11
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttag-catatttaataatcaacaaaaactaatggttgtgaagtcattcgtc
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TTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgttttactgagaatcccttaatttg-gtaaattacccattctaagaatagataaaccacatggacactttcattttctaagaatatatcaactaata
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G04330.1 (Glycine max), 5'ss of exon 8
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagcatatttaataatcaacaaaaactaatggttgtgaagtcattcgtc
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TTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGgtatgttttactgaggatcccttaatttattaaactactcattcttagaatagataaaccacatgtacactttcattttctaagagtatatcaactacta
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G32010.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgct-tcgtattttatgtaggcatgccacaacaattttagcatatttaataatcaacaaa--aactaatggttgtgaagtcattcgtc---------------------------------------------------------------------------------------
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TTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTGGAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGgtacttttcaaatccttttgtttcgttaactacattcataacatattgata--aacccaccctggtatggataaatgaaacattggcactaaagcgttccaatcatgaggacagtgaaatacattccacgaagagatgaccgtacttttctattaggtctgatgtcttggattttccatgttctctgcag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S42_132V6.1 (Physcomitrella patens), 5'ss of exon 8
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaa-----cttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagca--tatttaataatca-acaa-aaactaatggttg-tgaa-gtcattcgtc------
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TTCCAATTCCGCTTTTGGCCCAACAACAACAGCCGAATGTATGTGCTAGAGGGCGTTACCCCATGTATTCAATCGATGAAGCTGCACGCAGGGGATACAGgtatgtgttcctcacttctatactccgagaaatttgtggatatagtatcggtgtccagattattagcttgcggttatgcaataaacttctgattgctgaatatcagtgctcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917866|gb|CN547195.1|CN547195EST: GGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTG TAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGA
genomic: GGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttcta ... tttgctgcagTAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGgtaacttctattgcctgcttcgtattttatgtaggcatgccacaacaattttagcatatttaataatcaacaaaaactaatggttgtgaagtcattcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa