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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCACTGATCGCAAACTAAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattctcctttctcaaatgttactgctgtctgctttgatttgcttctaatctagctactaattcactggtactgttttaatag

Basic information

species Vitis vinifera
transcript Vv08s0058g00930.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407899|gb|CF213526.1|CF213526
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|46918783|gb|CN548112.1|CN548112
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|30125870|gb|CB911209.1|CB911209
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|110374612|gb|EC939494.1|EC939494
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|110362761|gb|EC926313.1|EC926313
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|71882027|gb|DT031082.1|DT031082
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|352795137|gb|FQ477247.1|FQ477247
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|110390213|gb|EC955113.1|EC955113
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|33407479|gb|CF213106.1|CF213106
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|71885356|gb|DT034411.1|DT034411
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|32458063|gb|CD799237.1|CD799237
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
EST: gi|110380642|gb|EC945925.1|EC945925
EST:     AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAG                         AAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA
genomic: AAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattc ... gttttaatagAAATGGGAGTTTTGGTGGGGAAGGGCGGATTTTATGGAAATGTTTTCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCACTGATCGCAAACTAAAAACTCCTGCAAATGTCGAAATTCTGCATATAATGGACCAGATGAAAGgtctgtattctcctttctcaaatgttactgctgtctgctttgatttgcttctaatctagctactaattcactggtactgttttaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG