Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 7
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcag
||||||||  | ||||||||||||||||| ||| | || ||  |||||||||| || || ||  | || ||||| ||||| |||||||||||||| |||||||   | || | | |  |  ||  |   |     ||  ||||  || |   |  || ||||  ||||| |||  |     || |  |     | ||    || || |   
ATTCCTGGAAGGCAAAATGACCGCAAAACTCTTCTAGGGGAGTTGAACTGGATTTTCACTGCTATCACAGACACTATTGCATGGAATGTTCTTCCTCATGgta--ctgatagtcgttttagttacaattaatgccagtgatcaattgctttctcattcattttcttttaatctgtt----atgattca-----actttcactgcgcag---

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 6
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgca-tatttattttgtgctgcag
||||||||  | ||||||||||||||||| ||| | || ||  |||||||||| || || ||  | || ||||| ||||| |||||||||||||| |||||||   | || | | |  | ||   |   |     ||  ||||  || |   |  || ||||  ||||| |||  ||| | |   |  | || ||   |             
ATTCCTGGAAGGCAAAATGACCGCAAAACTCTTCTAGGGGAGTTGAACTGGATTTTCACTGCTATCACAGACACTATTGCATGGAATGTTCTTCCTCATGgta--ctgatagtcattttaatcacaattaatgccagtgatcaattgctttctcattcattttcttttaatctg-ttatgattcaactttcactacgcag------------

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 7
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgc-agcatgagcaatcagc-tgttaaatttttaatttgt-------------------ttttattctccttacggtggtatatgcatatttattttgtgctgcag
|| |||||||| | ||||||||| || |||||| |||| ||| |||| ||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||  |       ||  ||    || |||   | ||   ||| | | || ||  ||||||   | |                   ||||  | |  ||   ||  || ||  ||  ||||||||| ||||||
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 7
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcag-catgagcaatcagct--gttaaatttttaatttgtttttattc--------tccttacggtggtatatgcatatttattttgtgctgcag-------
|| |||||||| | ||||||||| || |||||| |||| ||| |||| |||||||||||||| || ||||| || ||||| |||||||||||||| |||||||  |       ||  |     || ||| | | |    ||| | |   |||   ||||  || |    | |||         |  ||    |  || ||  ||  ||||||||| |||||        
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaattt---aattggct---tactgattttatgcagcatg---agcaatcagctgt--------taaatttttaa-tttg--tttttattc-tccttacggtggtatatgcatatttattttgtgctgcag
||||| || |||||||||||||| |||||| | || |||||  ||||||||||||| || ||||| || ||||||||||| |||||||| ||||| |  |||| ||    || |  |    || ||| |  |||||  ||      |||  |   ||         ||| | | || ||||  || || ||  |  |  |  |     ||| |  ||  ||||   |  |||
ATTCCCGGTCGCCAAAATGACCGTAAAACATTGTTAGGAGAGTTGAACTGGATCTTCACTGCAGTCACAGACACCATTGCCTGGAATGTGCTTCCACGCGgtacttcccaaactttccccctaatgaatcaatgcaaaattgttgacaaaaaatagtatcaagaccaaactctcaagtttgacttcttgtttgttttctccattcctcatgaa-gttagttttaccccacag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcag
||||| ||||| ||||| || || || ||| | || || ||  |||||||||| || ||||||||||| || || |||||||||||||| ||||| ||||||| ||       ||| |||   | ||  | || | | ||       | || ||    | || ||||   | |||| | |           ||  |  ||||   ||||||
ATTCCAGGCCGGCAAAACGATCGTAAGACATTGTTAGGGGAGTTGAACTGGATTTTCACAGCAGTGACGGATACAATTGCTTGGAATGTGCTTCCTCATGgtacttctccaaactttctg-cataatttatcaagggtaaatcttcttcaagtt---gacttcttttctgtgtcctcatga----------atgatagttttaccctgcag