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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGCCATCAAGAAGATCTCAGAATATGTTGCCCAACTGAGAAGGGTTGGAAAGGGACATGgtacgaatcaaattttaaattcactctttgtcatttctcttttctttgagcaagtgccactgtcttcttttcatataagcttgtaaccaatgaatccatccgcttccatttttggcatttagatctttttttttttaattggttggcttgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00410.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g01530.1 (Oryza sativa), 5'ss of exon 7
GTTGAAGCCATCAAGAAGATCTCAGAATATGTTGCCCAACTGAGAAGGGTTGGAAAGGGACATGgtacgaatcaaattttaaattcactctttgtcatttctcttttctttgagcaagtgccactgtcttcttttcatataagcttgtaaccaatgaatccatccgcttccatttttggcatttagatctttttttttttaattggttggcttgcag
||||||||||||||||||||||| || ||||| ||||| |||||||| || |||||||| ||||||  |  |                  |||||||        ||| ||      || | ||  |||   |     |||  | |||      |  |  |||| | |    |||    | |    || | | ||                      
GTTGAAGCCATCAAGAAGATCTCTGAGTATGTCGCCCAGCTGAGAAGAGTGGGAAAGGGGCATGgttagtgtg----------------ttttgtcagaaaatacttcatttgat--gtactaccatctatct-----atagacctgtggt---ttgactcatcagttgttgtttgctacgt---aatttgtgttgcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359752|gb|EC921829.1|EC921829
EST:     GAAGATCTCAGAATATGTTGCCCAACTGAGAAGGGTTGGAAAGGGACATG                         GAGTGTGGCACTTCGATCAAATGCTCCTCGAAGAGGGTGGTGCAGCATGAT
genomic: GAAGATCTCAGAATATGTTGCCCAACTGAGAAGGGTTGGAAAGGGACATGgtacgaatca ... tggcttgcagGAGTGTGGCACTTCGATCAAATGCTCCTCGAAGAGGGTGGTGCAGCATGAT
EST: gi|26267152|gb|CA818215.1|CA818215
EST:     GAAGATCTCAGAATATGTTGCCCAATTGAGAAGGGTTGGAAAGGGACATG                         GAGTGTGGCACTTTGATCAAATGCTCCTCGAAGAGGGTGGTACAGCATGAT
genomic: GAAGATCTCAGAATATGTTGCCCAACTGAGAAGGGTTGGAAAGGGACATGgtacgaatca ... tggcttgcagGAGTGTGGCACTTCGATCAAATGCTCCTCGAAGAGGGTGGTGCAGCATGAT