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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactcttatgaattcattttcattgtttatgcctttcaaacaattgcattgcagaaactggttttatttaacaaaaactttctgttcttgctctctcag

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400294|gb|EC966852.1|EC966852
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|71886245|gb|DT035300.1|DT035300
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|161708072|gb|FC055712.1|FC055712
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110429998|gb|EC996518.1|EC996518
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|32246818|gb|CD712637.1|CD712637
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|161721696|gb|FC070122.1|FC070122
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110383670|gb|EC948053.1|EC948053
EST:     GAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: GAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110698652|gb|EE076398.1|EE076398
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110402853|gb|EC963625.1|EC963625
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110688611|gb|EE067363.1|EE067363
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGANGCTGTCCAAAAAGCT                         GCTTCTGCTTTGAAGGGT-CTGAC-ACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110690135|gb|EE066968.1|EE066968
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|156735832|gb|EV239953.1|EV239953
EST:     CTTCAGGGA-GTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAG-CT                         GCTTCTGCTTTTGA-GG-TTCTGAACACCGCCGTGCTACTGATGTGAGGGC
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTT-GAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGC
EST: gi|33408742|gb|CF214369.1|CF214369
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|161721618|gb|FC070828.1|FC070828
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT
EST: gi|110719746|gb|EE095143.1|EE095143
EST:     CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCT                         GCTTCTGCTTTGAAGGGTTCTGACCATCGCCGTGCTACTGATGTGAGTGCT
genomic: CTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactc ... gctctctcagGCTTCTGCTTTGAAGGGTTCTGACCACCGCCGTGCTACTGATGTGAGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCAAGAGTGACTAATGAGGCTGTCCAAAAGGCTgtaagtactcttatgaattcattttcattgtttatgcctttcaaacaattgcattgcagaaactggttttatttaacaaaaactttctgttcttgctctctcag

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