1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGCAGCTGGGGATCTGTGCGCTATTTGCCAGGAGAAGATGCATGCTCCAATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttcttgcctcttcctcctgctgtgactgggttgtcctcctgtttgctgtatgaaattggagttggtagtgatgcaaaagtcatttgttcttttt...
species | Vitis vinifera |
transcript | Vv08s0056g00440.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTG GTTTGAGAGGGAAAGGACGTGCCCGEST: gi|110368592|gb|EC932580.1|EC932580
genomic: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttct ... ttggctccagGTTTGAGAGGGAAAGGACGTGCCCG
EST: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTG GTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGCEST: gi|22011953|gb|BQ796987.1|BQ796987
genomic: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttct ... ttggctccagGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGC
EST: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTG GTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGCEST: gi|110390287|gb|EC955189.1|EC955189
genomic: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttct ... ttggctccagGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGC
EST: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTG GTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGCEST: gi|110396248|gb|EC961929.1|EC961929
genomic: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttct ... ttggctccagGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGC
EST: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTG GTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGC
genomic: ATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttct ... ttggctccagGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAGCTGGGGATCTGTGCGCTATTTGCCAGGAGAAGATGCATGCTCCAATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttagtttcttgcctcttcctcctgctgtgactgggttgtcctcctgtttgctgtatgaaattggagttggtagtgatgcaaaagtcatttgttcttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaag