1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaactatcttgataagtgttattagaatcatgcctgcatggttatgatgggattcacaaatcctcaccttgtaaaagaaatgttaaattttaaa...
species | Vitis vinifera |
transcript | Vv08s0040g03130.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTG GCAGCAAGGGGGAATCATTGTTGCAGGTCCCGGTAAAAGTAACATCTCATAEST: gi|110374235|gb|EC938881.1|EC938881
genomic: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaac ... gttttctcagGCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATA
EST: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTG GCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATAEST: gi|110731056|gb|EE108844.1|EE108844
genomic: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaac ... gttttctcagGCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATA
EST: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAAGCTG GCAGCAAGGGGGAATCATTGTTGCAAGTCCTGGTAAAAGTAACATCTCATAEST: gi|351021722|gb|FQ437107.1|FQ437107
genomic: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaac ... gttttctcagGCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATA
EST: AGGACTGGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTG GCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTTCATEST: gi|110360893|gb|EC924336.1|EC924336
genomic: AGGACTGGGGG-CTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaac ... gttttctcagGCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCT-CAT
EST: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTG GCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATA
genomic: CAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaac ... gttttctcagGCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGGGGGCTTTCCTTTCAAAGGGATACCGTGACAAGAGGAGGCTGgtatgtaaactatcttgataagtgttattagaatcatgcctgcatggttatgatgggattcacaaatcctcaccttgtaaaagaaatgttaaattttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa