Sequence
atgc intronic sequence ATGC exonic sequenceTTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgacattaaaaaaaaaatgctattgtttatatccatagtttcattgatgattttgtgtatgttcacatgtgtgttattacactattgaacaact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G386991_T01 (Zea mays), 5'ss of exon 7
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgt-attgcgacattaaaaaaaaaatgctattgtttatatc-catagtttcattgatgattttgtgtatgttcacatgtgtgttatta-cactattgaacaact
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TTATGCATGACTTGCGACTTATTCACACGGATCTGAAGCCAGAAAACATTCTCCTTGTTTCATCAGAGTCTATCAGGGTGCCTGATTATAAGgttgttactggattcctaaacttttacacacttctgtattgtatttactgattaa-ggttctttttagga-catatacacattattaatgttctttagcaat-
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 7
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgacattaaaaaaaaaatgctattgtttatatccatagt--ttcattgatgattttgtgtatgttcacatgtgtgttattacactattgaacaact-
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TTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTATTTCATCAGAATTCATTAAAGTGCCAGACTATAAGgtatcatcttcttaattattc--tcctactatcc-tgtcagtactagctgaggggtgtaaataagtgacttttggaccatgcaattgcaattttccttatgtg
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G35800.1 (Glycine max), 5'ss of exon 5
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgacattaaaaaaaaaatgctattgtttatatccatagtttcattgatgattttgtgtatgttcacatgtgt---gttattacactattgaacaact
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-----------TTATGCAT----CACACTGATTTGAAGCCAGAGAACATTCTTCTTGTCTCATCAGAATTCATTAAAGTGCCAGACTATAAGgtatcatattcttacttattctcc-ttatcgtgattcgacttcatcccatttaaactttctttctaggaaaaaaaaataaagctctttgaaaaatgatcaa--
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 9
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgac--attaaaaaaaaaatgctattgtttatatccatagtttcattgatgattttgtgtatgttcacatgtgtgttattacactattgaacaact-------------------
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ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtga-gcaatcaatcatctccaagctggactcatttattttcatggctaatatgatatccatccatgaaggaacttgtataactcttgacccttttcctatgtgtggtcatgaaaatctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860081|gb|DT009136.1|DT009136EST: AAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAG TTTCTATCGCGGACTATTAAAGA
genomic: AAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgac ... tgcaatttagTTTCTATCACGGACTATTAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgacattaaaaaaaaaatgctattgtttatatccatagtttcattgatgattttgtgtatgttcacatgtgtgttattacactattgaacaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaac