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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATAGATGAAAAGCAGGACAGATCTTTCTTTTACTACTTTGTTGAAGCGGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaatttatgctttaaattaactgtagctgctaacgttagaatcatttctgagtttttaacagatctagcattaattttacctttttccttgtatag

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033160|gb|FQ461932.1|FQ461932
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|37188456|gb|CF607805.1|CF607805
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|349827848|gb|FQ422716.1|FQ422716
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|77583953|gb|DV221017.1|DV221017
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351043304|gb|FQ444025.1|FQ444025
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351056246|gb|FQ453708.1|FQ453708
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351055541|gb|FQ442337.1|FQ442337
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|110709191|gb|EE084434.1|EE084434
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|37189567|gb|CF608916.1|CF608916
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|110707772|gb|EE084549.1|EE084549
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351053966|gb|FQ441732.1|FQ441732
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|77583880|gb|DV220977.1|DV220977
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|71875979|gb|DT025034.1|DT025034
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGTTGGAGCTTTCGCCCAACATGGCCCTT
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAG------C---C-C--AACATGGCCCTT
EST: gi|110707915|gb|EE084860.1|EE084860
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|349815813|gb|FQ400978.1|FQ400978
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|352789896|gb|FQ478711.1|FQ478711
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351040753|gb|FQ438297.1|FQ438297
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|71873082|gb|DT022137.1|DT022137
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|349826160|gb|FQ415965.1|FQ415965
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351041354|gb|FQ447481.1|FQ447481
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351040299|gb|FQ425385.1|FQ425385
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|77577309|gb|DV217367.1|DV217367
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351016501|gb|FQ423928.1|FQ423928
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|349828939|gb|FQ419272.1|FQ419272
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|349824039|gb|FQ417426.1|FQ417426
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|351023398|gb|FQ432781.1|FQ432781
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAGCATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|77580683|gb|DV219246.1|DV219246
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|71876799|gb|DT025854.1|DT025854
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGGTGGAGCTTTCGCCCAACATGGCCCTT
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAG------C---C-C--AACATGGCCCTT
EST: gi|351022732|gb|FQ428641.1|FQ428641
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTG
EST: gi|71869935|gb|DT018990.1|DT018990
EST:     GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAG                         GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTT
genomic: GGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaattta ... ccttgtatagGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATAGATGAAAAGCAGGACAGATCTTTCTTTTACTACTTTGTTGAAGCGGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGgtaaaatttatgctttaaattaactgtagctgctaacgttagaatcatttctgagtttttaacagatctagcattaattttacctttttccttgtatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG