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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgactgtgtgttatatatggataatcctgaaggtaaaaaagatccgcccattcccccaacccccaacacatgcacaccc...

Basic information

species Vitis vinifera
transcript Vv08s0040g00410.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 8
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagtt--acagttt--atttgt-ttgactgtgtgttatatatggataa-----tcctgaaggtaaaaaagatccgcccattcccccaacccccaacacatgcacaccc
|  ||||||||||||||  | || ||||| ||||||||||| ||||||||||||   ||| ||  | |||| |||  ||     | | |  | |  |     | |||     ||| ||  |  |  || |     ||     |||   |        
AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACgtaagtttatcagcttcaaattgtattgggtgctctctttgtcagcactaatatcttctgttttaaaacaaagttggtgcaattatgaaaatt--aactatt--------

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 8
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgact---gtgtgttatatatggataatcctgaaggtaaaaaagatccgcccattcccccaacccccaacacatgcacaccc
|  ||||||||||||||| | || || || ||||||||||| |||||||||| |    ||| ||| ||||       ||   | | | |   |  | ||   |     || | |     |||   |  ||    ||     |||  |   
AAATACTTTGGTGCTGCATTAGGGAAGGGGAGACAGGCTGCAAAAACgtaagcttacttttttttatttgttcttaatgctctctttgtttcttgttcttctgtcgcgaatgcttaaaacataatca-aataaacatttattgcttat--

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 7
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgactg-tgtgttatatatggataatcctgaaggtaaaaaagatccgcccattccc--ccaacccccaacacatgcacaccc
|| || || |||||||||||||| || ||||| |||||||||||||||||||| |   |  ||   ||  | || |||  | ||| |    ||||    |  || |   | |  || |  |        |   |  |  |    | |   
AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaat-tatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat--

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 7
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgactgtgtgttatatatggataatcctgaaggtaaaaaagatccgcccattcccccaacccccaacacatgcacaccc-----
|| || || |||||||||||||| || ||||| |||||||||||||||||||| | |  | | || |   | |||   || |  |    |||  |  |     | |    |     |  ||           |   | |   | |       
AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAACgtaagt-atacatcacttatagaaatgta-attgtgcac---taaatcaaataactatattcttttttactgtctgttgggggtgatatcttatcctcttgtatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545358|gb|CF513590.1|CF513590
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         GGAGATTGAGAAGTTGAGGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|87584053|gb|DY473356.1|DY473356
EST:     AGGTACTTTGGTGCTGCAATTGTAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGT
EST: gi|110712939|gb|EE088423.1|EE088423
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351026032|gb|FQ428044.1|FQ428044
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|26267610|gb|CA818673.1|CA818673
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351016637|gb|FQ424064.1|FQ424064
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110689940|gb|EE066605.1|EE066605
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110405352|gb|EC970893.1|EC970893
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110719773|gb|EE095192.1|EE095192
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110720841|gb|EE097126.1|EE097126
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|34545280|gb|CF513512.1|CF513512
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         GGAGATTGAGAAGTTGAGGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|161715533|gb|FC069462.1|FC069462
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|349829839|gb|FQ422152.1|FQ422152
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351012831|gb|FQ430394.1|FQ430394
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110428341|gb|EC994810.1|EC994810
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110702145|gb|EE080525.1|EE080525
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|71880094|gb|DT029149.1|DT029149
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351017561|gb|FQ435914.1|FQ435914
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|34543966|gb|CF512198.1|CF512198
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|34362721|gb|CF404306.1|CF404306
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110720821|gb|EE097078.1|EE097078
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCNG-CAAGGGGTTA
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTC-GACAAGGGGTTA
EST: gi|110718292|gb|EE094957.1|EE094957
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351033938|gb|FQ462993.1|FQ462993
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACTAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110727594|gb|EE104529.1|EE104529
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110707900|gb|EE084829.1|EE084829
EST:     ANGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCGAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351023141|gb|FQ432524.1|FQ432524
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|349823527|gb|FQ414937.1|FQ414937
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|161719434|gb|FC067375.1|FC067375
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351029065|gb|FQ435265.1|FQ435265
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|161712773|gb|FC061997.1|FC061997
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGATATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCG
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCG
EST: gi|22010249|gb|BQ795283.1|BQ795283
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110428899|gb|EC995383.1|EC995383
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110713723|gb|EE089893.1|EE089893
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGGCAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|110686023|gb|EE063265.1|EE063265
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|30253109|gb|CB970660.1|CB970660
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
EST: gi|351021754|gb|FQ437139.1|FQ437139
EST:     AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAAC                         AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT
genomic: AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttaca ... ttatggacagAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgactgtgtgttatatatggataatcctgaaggtaaaaaagatccgcccattcccccaacccccaacacatgcacaccc

- - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccaa