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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcag

Basic information

species Vitis vinifera
transcript Vv08s0032g01230.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 9
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacaca---tatttgtgtatttatgcaatattatccttcaatatgctggcag
|||| |||| |||||| ||||||| ||||| |||||||| ||||||||||||||  ||||||| |||||||||| |||||||||||| || || ||||||||||    ||| || |   | |     |       ||| | | | ||  | | |  | | |   ||||  | | ||| |  |||  |||      ||||| || |||
TCCTAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCAAATGCCCCAACAATGCACATACCGgtatgcatgattttat--atttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttt-taattatatttggacatatg-tgccag

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatcttttta-gtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcag
|||  |||| |||||| ||||||| ||||| |||||||| ||||||||||||||  ||||||| ||||||||||  ||||||||||| || || ||||||||||   | ||  |||||  | |     |        |  | | | ||  | | |  | | | | |  |    || |  |||  |||  ||  | ||| || |||
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtat---gaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaat--tatatttggacatg-tgtcag

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcag
|||||| || |||||| ||||||||||||| ||||||||||| ||||| |||||| ||||||| | ||||||||| ||  | || ||||| || || |||||||          | ||||  | |    | | ||| ||| || ||| || ||                 |||  ||   |||     |||||  |  || |||
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatg---------tctagttgtaaatc-cagtgacttgt-ttatgatctgat-----------------attcgtgacttatctcttttcaacttattgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352773708|gb|FQ472490.1|FQ472490
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352778146|gb|FQ468808.1|FQ468808
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352764590|gb|FQ472947.1|FQ472947
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352773574|gb|FQ472356.1|FQ472356
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352768279|gb|FQ469454.1|FQ469454
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA
EST: gi|352782101|gb|FQ470003.1|FQ470003
EST:     CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCG                         GGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAG
genomic: CTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtgga ... atgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAA