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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGCAATTGGTGAATGTGGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtttgttcagacaaaaattgtttggcatatgttcctttcttagtatgttttagtttctcattctttttctttcaatcaaatgaaggcatgtttgcactgttcgtttgttacattag

Basic information

species Vitis vinifera
transcript Vv08s0032g01170.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 7
GTGGTGGCAATTGGTGAATGTGGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtttgttcagacaaaaattgtttggcatatgttccttt--cttagtatgttttagtttctcattctttttctttcaatcaaatgaaggcatgtttgcactgttcgtttgttacattag-
||||| |||||||| |||||||||||||| || ||||||||||| ||||||||| | ||| |||| ||||||||||  || |     ||  |   || || |  || ||| |  ||  ||   | | | ||   || |  ||  |  | | | ||   ||| ||    |  ||    |  |  | ||| | || |  
GTGGTTGCAATTGGAGAATGTGGATTGGACTATGACAGGCTTCATTTTTGCCCAGCAGAGATTCAAAAGAAgtatgcagtctcac--gattacctttattagaaatgtgtcctattaactccttttctcttttattgttttttgtaatatattaaaataatcaaccagtcatttgttttcttatctgtgaaatcaag

upper sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
GTGGTGGCAATTGGTGAATGTGGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtttgttcagacaaaaattgtttggcatatgttcctttctta-gtatgttttagtttctcattctttttctttcaatcaaatgaaggcatgtttgcactgttcgtttgttacattag
||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||  |||  | |||||||||||    ||||| |||   ||||| | |   |  ||  ||  ||||||   | ||   ||  |||  ||  ||| | | |  |  ||                                     
GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgta---agtttgatca--taaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402575|gb|EC960475.1|EC960475
EST:     ACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAA                         GTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT
genomic: ACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtt ... gttacattagGTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT
EST: gi|87585201|gb|DY474017.1|DY474017
EST:     GGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAA                         GTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT
genomic: GGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtt ... gttacattagGTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT
EST: gi|161710738|gb|FC060303.1|FC060303
EST:     GGATTGGAT-ACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAA                         GTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT
genomic: GGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtt ... gttacattagGTACTTTGAGAAGCAATTTGAGTTAGCATATGCCATGAAGCTGCCTATGTT