Sequence
atgc intronic sequence ATGC exonic sequenceTAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctattatctttcatttatcattgcttattttctcagtaattaaactagattttttgaattgagattttatactctggtaactgcaacttaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 7
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctat---tatctttcatttatcattgcttattttctcagtaat-taaactagattttttgaattgagattttatactctggtaactgcaacttaat
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TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgattta-cgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt---
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 7
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctattatctttcatttatcattgcttattttctcagtaattaaactagattttttgaattgagattttatactctggtaactgcaacttaat
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TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttata----ttcacctctgatt---taaactaacaa-aattaaattag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377414|gb|EC942476.1|EC942476EST: ATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGG AACTACACAAATCTCTTACGCAACTTGGTGAAAGGTAATGTATCCCTGCAC
genomic: ATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatct ... cttggggcagAACTACACAAATCTCTTACGCAACTTGGTGAAAGGTAATGTATCCCTGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctattatctttcatttatcattgcttattttctcagtaattaaactagattttttgaattgagattttatactctggtaactgcaacttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa