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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGCTGAAGGCAACCAAAGTCTACCAGAAATGGGCAAAACAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatctcaacttcagagttgtgttttcatgcttacagtagttttaacttttatgacccctggatgaataatatgcctttgacag

Basic information

species Vitis vinifera
transcript Vv08s0007g07960.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297265|gb|CB974059.1|CB974059
EST:     CAAGTGTCTGAAGCAAAACCCCCTATTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351015510|gb|FQ447339.1|FQ447339
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTTTTAGCAATTATATCTCGGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|349825564|gb|FQ419481.1|FQ419481
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTTTTAGCAATTATATCTCGGCGC
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGC
EST: gi|30297223|gb|CB974017.1|CB974017
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|352794289|gb|FQ479531.1|FQ479531
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351028672|gb|FQ446345.1|FQ446345
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351054628|gb|FQ456825.1|FQ456825
EST:     CAAGTGTCTGAAGCATAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCCAATAAAGAGTCAGAATCAGATCTATTAGCAATT
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATT
EST: gi|110686833|gb|EE063714.1|EE063714
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTTAGGAAGAGAGGANN                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|349827514|gb|FQ422382.1|FQ422382
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|110701183|gb|EE078491.1|EE078491
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351048863|gb|FQ431528.1|FQ431528
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAACGCAA
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351023284|gb|FQ432667.1|FQ432667
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCAATTATATCTCAGCGCAG
EST: gi|351040488|gb|FQ434621.1|FQ434621
EST:     CAAGTGTCTGAAGCAAAACCACCTACTAATCCTTTAAGGAAGAGAGGAAA                         ATCAAATAAAGAGTCAGAATCAGATCTATTAGCA
genomic: CAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatc ... cctttgacagATCAAATAAAGAGTCAGAATCAGATCTATTAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGCTGAAGGCAACCAAAGTCTACCAGAAATGGGCAAAACAAGTGTCTGAAGCAAAACCACCTACTAGTCCTTTAAGGAAGAGAGGAAAgtgagtcatctcaacttcagagttgtgttttcatgcttacagtagttttaacttttatgacccctggatgaataatatgcctttgacag

- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA