Sequence
atgc intronic sequence ATGC exonic sequenceGGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgaccttttatattagtaatgccatatttgatctttatgcaatttgagtgaatggttatgcagtcaaaaaaaattgagatatggtaccttttgaataat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 5
GGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgaccttttatattagtaatgccatatttgatctttatgcaatttgagtgaatggttatgcag---tcaaaaaaaattgagatatggtaccttttgaataat
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AGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgtgtcttgtacatttactccagtagatctctatgctagttaaagaatgcattttgccagtttcaaaatgatgttcaaagtaatggtcaatgaag---
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 6
GGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgaccttttatat-tagtaa---tgccatatttgatctttatgcaatttgagtgaatggttatgcagtcaaaaaaaattgagatatggtaccttttgaataat--
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CGGTAGAGACGCGGCTACAGGACGAGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgt-acttgttgtgtcttgtacatttactccaattgatctctatgctagt-gaatgaata---atgcattatgccagttttaaaatgatgttcaaagt-aatggtcc
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 6
GGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgt--gacct--tttatattagtaatgccatatttgatctttatgcaatttgagtgaatggttatgcagtcaaaaaaaattgagatatggtaccttttgaataat
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AGGCAGAGATGCAGCTACAGGACGAGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGGATGAGTCTATCCGGACAGCGGCTTGTCATACAGgtacgacttgatctctatgctaaatgaaaacagcattaatcatgcacagtagtttgaaaatcatgctttcaacaatgattaatatttaatagagatataa----
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G26940.1 (Glycine max), 5'ss of exon 5
GGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgaccttttatattagtaatgccatatttgatctttatgcaatttgagtgaatggttatgcagtcaaaaaaaat-tgagatatggtaccttttgaataat----
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AGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGACAGCGGTTTATCATACAGgt-actacttgtttt-gtattacttaaattgatctctatgctaaatga---aaacaacattcattatatgttaatgtaaggactggtgcttctaacatcatgcacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404746|gb|CF210373.1|CF210373EST: TTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAG GGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGT
genomic: TTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgacctttt ... tttatcccagGGGTTTGGGAATGTGGGTTCTTGGGCTGCCCAACTCATCAGTGAACACGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACAACGGTTTGTCATACAGgtgaccttttatattagtaatgccatatttgatctttatgcaatttgagtgaatggttatgcagtcaaaaaaaattgagatatggtaccttttgaataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa