Sequence
atgc intronic sequence ATGC exonic sequenceGCTATTTCTGCTAGTAGCTCTGAAGTGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcattctcttgaattttgatatgaacattacctggtttgctttagagggcatatgtagaccaaatggaaatcaggattccaaatgcacaccatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G33240.1 (Glycine max), 5'ss of exon 7
GCTATTTCTGCTAGTAGCTCTGAAGTGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcattct--cttgaattttgatatgaacattacctggtt--tgctttagagggcatatgtagaccaaatggaaatcaggattccaaatgcacaccatt
|| ||||||||||||||||| || || ||||||||| |||| || ||||||| ||||||||||||||||| |||||| | | ||| | | || || || || || | ||| || ||| | | || || | ||| | | |
GCAATTTCTGCTAGTAGCTCAGAGGTCCCATCAGTATTAGAGTTCCTGCAGCGGCGGAAGTTGGAAGCTAACAAGgtatctttctccctgctttattattcccgtgctt-ctaattgattaattcttcaggctgcaatattgcagcagttgctatcttctatttctttttaatttg---
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G30320.1 (Glycine max), 5'ss of exon 11
GCTATTTCTGCTAGTAGCTCTGAAGTGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcattctct-tgaattttgatatgaaca---ttacctggtttgctttagagggcatatgtagaccaaatggaaatcaggattccaaatgcacaccatt
|| |||||||||||||||||||| || |||||| || |||| || ||||||| ||||||||||||||||| |||||| | ||||| || || | || | || || || | | ||| || | || || | ||| | | | | |
GCAATTTCTGCTAGTAGCTCTGAGGTCCCATCAATATTAGAGTTCCTGCAGCGGCGGAAGTTGGAAGCTAACAAGgtat---ctttctccatggtttgttattccagtgcttctaattgattaattcgtggctgcaatagtgcagcagttgctatctgctatttcttttttattcagt-
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G12010.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATTTCTGCTAGTAGCTCTGAAGTGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcattctcttgaattttgatatgaacattacctgg----tttgctttagagggcatatgtagaccaaatggaaatcaggattccaaatgcacaccatt-
|| ||||| ||||| ||||| || | | || | |||||||| |||||||| ||||||||||||| |||||||| | | |||| || | | || | | | | | | ||||| | | | || | | || ||| || ||| | |||| ||
GCAATTTCCGCTAGCAGCTCAGACAGGACGTCTCTTCTAGAATTCCTGCAGCGAAGGAAGTTGGAAGCAAATAAGgtccaaactttctgttaatctgtgttttagataggagtttaaaattttgcccaaaaaacaagatatgagtctaaaataaa-catgat----gaagcacctgtttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715244|gb|FC064582.1|FC064582EST: TGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAG GCCAAACAATTGTGCTTGGCAATTGTACGCACTGTTATTCTAGAACGCAGA
genomic: TGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcat ... tttgtttcagGCCAAACAATTGTGCTTGGCAATTGTACGCACTGTTATTCTAGAACGCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTATTTCTGCTAGTAGCTCTGAAGTGCCATCAGTACTAGAATTTTTGCAGCGACGGAAGTTGGAAGCTAATAAGgtaagagcattctcttgaattttgatatgaacattacctggtttgctttagagggcatatgtagaccaaatggaaatcaggattccaaatgcacaccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa