Sequence
atgc intronic sequence ATGC exonic sequenceTGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgttatgcttttaattcagtctttatttatatgaatattagctaagtatgatttccacgagtcatttttcttgaacatatgttaacatcagttggaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G28310.1 (Glycine max), 5'ss of exon 8
TGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgttat--gcttttaattcagtctttatttatat---gaatattagctaagtatgatttccacgagtcatttttcttgaacatatgttaacatcagttggaa
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TGCAAACAGGGTTGCGACTGTAGTTGCAAATGAGTGGAAAGATGCTAATGATAAAGTGATGCCAGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGgcatgtgaacagctcagaaattgcttttgctttgtcttttgcaagttacttggatgtttcttgcagcagatgttcacaaaatactcctgttgattgatgt-----
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G31040.1 (Glycine max), 5'ss of exon 7
TGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgtta--tgcttttaattcagtctttat-ttatatgaatattagctaagtatgatttccacgagtcatttttcttga-acatatgttaac--atcagttggaa------------------------------------
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------------------------------------------TGCTAATGATAAAGTGATGCCTGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGGCATGTAAACAGCTCAGAAATTGCTTTTGCTGTCTTTTGCAAgttatttggatgtttcttgcagcagatgttttgcaaaatacgcctgttgattgatgttttgtcatacatacaatatgtcatttaccgatttttcctgttc
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S31_77V6.1 (Physcomitrella patens), 5'ss of exon 7
TGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgttatgcttttaattcagtctttattta----tat-gaatattagctaagtatgatttccacgagtcatttttcttgaacatatgttaacatcagttggaa-----------------------
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AGCTAACAGAGTTGCAGTTGTTGTTGCAAATGAGTGGAAGGATGCAAATGACAAGGTTATGCCTGTCAAGCAGTGGCTCGATGAGAGGAGGTTTATGCAGgttcgtttgattttgcagtctgtacctcctgaatgttatcgattatgaggtaagcagtaaaat-acaactttttttcttttttcttttctgattgtgagttttctgatcattgtcgttacgattacag
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ18059 (Selaginella moellendorffii), 5'ss of exon 7
TGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgt---tatgcttttaattca-gtct-ttatttatatgaatattagctaagtatg-atttccacgagtcatttttcttgaacatatgttaacatcagttggaa
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AGCAAACAGAGTGGCAGTCGTCGTTGCAAACGAATGGAAGGATGCAAACGACAAGGTCATGCCCGTGAAACAATGGCTTGAAGAGAGGAGATTCATGCAGgtgcgtgcgtacgttgtgtgtgcgtgtgtgtttcttccattcggcctaactaagtgcgtgtccttgtcag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384051|gb|EC948465.1|EC948465EST: ACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAG GGAGAAATGCAACTACTTCGAGATAAACTGGCTGTAGCAGAGCGCACAGCC
genomic: ACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgttatg ... atctctgtagGGAGAAATGCAACTACTTCGAGATAAACTGGCTGTAGCAGAGCGCACAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAAATCGAGTTGCTGTTGTTGTTGCAAATGAATGGAAAGATGCCAATGACAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAAATTTTTTCAGgcatgttatgcttttaattcagtctttatttatatgaatattagctaagtatgatttccacgagtcatttttcttgaacatatgttaacatcagttggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA