Sequence
atgc intronic sequence ATGC exonic sequenceGGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctagaataaattttttctgcagtctcacccatcagaactattcatatttatatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G20530.1 (Glycine max), 5'ss of exon 7
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctagaataaattttttctgcagtc--tcacccatcagaactattcatatttatatca
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GGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCAAGAGTGGCTAATGCTCATTCCTTCATCATCAAACTTCCCGAAGGTTATGAAACTCAGgttagcca-actaagactaatgttgctttgtgaaattggtccagtgaaaaatgcatacttgttacttgtgatggtggctgatcatcaaccatcctaatggt-
upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G06220.1 (Glycine max), 5'ss of exon 8
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctagaataaattttttctgcagtc--tcacccatcagaactattcatatttatatca
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GGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCAAGAGTGGCTAATGCTCACTCTTTCATCATCAAACTTCCCGAAGGCTATGAAACTCAGgttagtcaacttaagctaatatt-gctttgtgaaattggtccagtgaaaaatgcatattttgtgatggtggttgatcatcaaccaccctaatggtcctgta-
upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G34080.1 (Glycine max), 5'ss of exon 7
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctag-aataaattttttctg-cagtctcacccatcagaactattcatatttatatca
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GGGTAGGCCTGATGCAGACCAAGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACACAGgttagtcatctgtgttttatgaaaatggcttccggaattgcatgtgtggtgatgaattggtggtggcccttttaagctagtcacataattggatttgaat--
upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 7
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctag-aataaatt--ttttctgcagtctcacccatcagaactattcatatttatatca
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GGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGgttagtcatctttgttttatgaaaatggctcctggaattgtatgtgtagtgatgaattgatgattgcccttttaaactagtcacatcattgg-atttgaat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699988|gb|EE077512.1|EE077512EST: CTTCCCGAAGGCTTTGACACTCAG GTAGGGGAGAGAGGATTCCAGCTCTCAGGAGGGCAGAAGCAGAGAATAGCT
genomic: CTTCCCGAAGGCTTTGACACTCAGgttagccaca ... aaaatggcagGTAGGGGAGAGAGGATTCCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctagaataaattttttctgcagtctcacccatcagaactattcatatttatatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc