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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaagattgcaattatatcaatttcttgtatggttatctgcgctttaggattatagttatttattttattgttgtcttag

Basic information

species Vitis vinifera
transcript Vv08s0007g04290.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 8
CATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaaga-------ttgcaattatatcaatttcttgtatggttatctgcgcttt-agga------ttatag--ttatttattttattgttgtcttag
||||| | ||||||||||| ||||  |||||||| ||||||||||| || ||||  ||||||||  | ||||| ||| ||||| |||| ||| ||||||||||||||| | |       ||| | ||   |   ||| ||   |||| ||   | |||| ||||      |||||   | |    ||||  | |||||||||
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAATCAGCATTTTCTCCTGAgtaagtttgacacgctattttgtactttcttgcttttatttcttggtcattgcctctttcaggagtgactttataaactgacaccttttccttttgtcttag

upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 9
CATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaaga-------ttgcaattatat-caatttcttgtatggttatctgcgcttt-aggatt--atagttatttattttattgttgtcttag-------------
||||| | ||||||||||| ||||  |||||||| ||||||||||| || || |  ||||||||  | ||||| ||| |||||||||| ||| |||| |||||||||| | |       ||| | ||   | |  ||| ||   |||||||   | |||| ||||      ||| | ||  |  | ||    |||               
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtttcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110380386|gb|EC945648.1|EC945648
EST:     TTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGA                         GTATGGGTTGTTCTCTCAAACCTCAACTTCAGACAGACTCCTAATCCCTAA
genomic: TTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaa ... gttgtcttagGTATGGGTTGTTCTCTCAAACCTCAACTTCAGACAGACTCCTAGTCCCTAA