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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATATTATGCTCCAATCTGAGGTGGAAACGAATTCTGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatctgtgtcttaggcttcttttcttcaacttctctcttaggttgcttttttcatgttcctcttttttttttttttttggcag

Basic information

species Vitis vinifera
transcript Vv08s0007g04230.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727350|gb|EE104013.1|EE104013
EST:     TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
genomic: TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
EST: gi|30137128|gb|CB922466.1|CB922466
EST:     TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
genomic: TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
EST: gi|110718237|gb|EE094838.1|EE094838
EST:     TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTACTGGGTGCTCTTCTTACTACAG
genomic: TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
EST: gi|30127341|gb|CB912680.1|CB912680
EST:     AGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
genomic: AGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
EST: gi|110720724|gb|EE096897.1|EE096897
EST:     TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTACTGGGTGCTCTTCTTACTACAG
genomic: TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
EST: gi|30130563|gb|CB915902.1|CB915902
EST:     TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAG                         AATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG
genomic: TGGTGCTAGTAACTGTATGGGTTATTTTCCTACTTCTTCAGATCTTCAAGgcaagtaatc ... tttttggcagAATGATTCAACAGTTTGCAGTGCATGGTATTGGGTGCTCTTCTTACTACAG