Sequence
atgc intronic sequence ATGC exonic sequenceTACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgtttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatctcaactaaaagttcaatttgcttttaagactgcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G34800.1 (Glycine max), 5'ss of exon 7
TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgt-ttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatctcaactaaaagttcaatttgcttttaagactgcc-
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TACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTAAATGCAGTTGGAACTCCAAGgtcttgatttcaaatcacatgaaccaattttaaaaacaagttccctg----tttagcaagtaaaactttg-ttgactttattcgttgtttcctatgtttcag
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G37480.1 (Glycine max), 5'ss of exon 7
TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgt-ttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatct------caactaaaagttcaatttgcttttaagactgcc---------------
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TACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGgtcttgatttctcttgagttttgctctattatcaaatcacatgatccaattttaaagacaaggaacttgttttgcaagtaagagtttg-ttgactttattcattgtgttttctatgtttcag
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G07560.1 (Glycine max), 5'ss of exon 8
TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgt-ttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatctcaactaaaagttcaatttgcttttaagactgcc-
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TACCCGCTACAGTTGTGGTGCCTGAGGTGGTTGTCCCCAAGTGGGGTGCTGTTTACATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGgtcttcatttttctcaattttccctcctttgctctataatctttttattttttttatttttatcgagcaagttagtttgttaattt--tgtgagaaatgaca
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G21440.1 (Glycine max), 5'ss of exon 8
TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgtttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatctcaactaaaagttcaatttgcttttaagactgcc--
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TACCTGCTACTGTTGTGGTGCCTGAGGTGGTGGTCCCCAAGTGGGGTGCTGTGTACATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGgtcttcatttttctcaacttttccctcctttgctctataatctgtttgcctctactatc--aaatctcaaacaaaagtaggattaaccttagagaaaatagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: GTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAG GTCACTCCACTTAATGGGTTTCTGGATCCTTTTTGAGAATGTCATGTCCCT
genomic: GTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgtttggtttc ... tatctttcagGTCACTCCACTTAATGGTTTTCTGGATCCTTTTTGAGAATGTCATGTCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgtttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatctcaactaaaagttcaatttgcttttaagactgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa