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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATAGCTGCTTTTTATGAGGGTTATTATGCTAATAAAGGAATCAAAATTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttcttggacatctgatatgttaattttagtatttatttgggagcaaaagccttttatgtagcaatttgagtcttatcattcag

Basic information

species Vitis vinifera
transcript Vv08s0007g03610.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723311|gb|EE100477.1|EE100477
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTANGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|161709350|gb|FC059679.1|FC059679
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|110380711|gb|EC945999.1|EC945999
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|110373500|gb|EC937742.1|EC937742
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|161713126|gb|FC062484.1|FC062484
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|33403613|gb|CF209240.1|CF209240
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTCTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|29784398|gb|CB345068.2|CB345068
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
EST: gi|349827863|gb|FQ422731.1|FQ422731
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAAGGAT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAA-GGAT
EST: gi|26264446|gb|CA815509.1|CA815509
EST:     TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAG                         GTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT
genomic: TTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttctt ... tatcattcagGTAAAGGAAGTGAAACTTAAGGATGGTAGGGTGCTGGAAGCTGACATTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTATAGCTGCTTTTTATGAGGGTTATTATGCTAATAAAGGAATCAAAATTATCAAGGGAACAGTAGCAGTTGGGTTTACCTCTGATGCAAATGGAGAGgtaatttcttggacatctgatatgttaattttagtatttatttgggagcaaaagccttttatgtagcaatttgagtcttatcattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA