1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCCCCAGCCTCTCTTACTCCTACTTCTTCTCCTTCTCCAAATTATGGACCGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccatttcttttgttgaaggaaatttcagctttattgataatggcttgaaccatgtattgctttcttctattgataagtattaattaatgtttta...
species | Vitis vinifera |
transcript | Vv08s0007g02870.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACATGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|30125474|gb|CB910813.1|CB910813
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|110395799|gb|EC961471.1|EC961471
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|30134150|gb|CB919488.1|CB919488
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACATGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|30132571|gb|CB917910.1|CB917910
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACATGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|30130708|gb|CB916047.1|CB916047
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACATGGTCCACCAAGCGTTGCTGAAGTTGCTTACTEST: gi|30129727|gb|CB915066.1|CB915066
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
EST: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAG GACAATCAATTCATTGACATGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
genomic: CGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccat ... ttgtgcctagGACAATCAATTCATTGACTTGGTCCACCAAGCGTTGCTGAAGTTGCTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCCAGCCTCTCTTACTCCTACTTCTTCTCCTTCTCCAAATTATGGACCGGTTATAAACAGAGACAAAGTTCGTGATGCTCTTTTATTGCTCGCTCAGgtatttccatttcttttgttgaaggaaatttcagctttattgataatggcttgaaccatgtattgctttcttctattgataagtattaattaatgtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat