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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag

Basic information

species Vitis vinifera
transcript Vv08s0007g02230.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g16040.1 (Oryza sativa), 5'ss of exon 7
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| || ||||| |||||  | || |||||||||   || || || || |||||| | ||||| || |||||||||||||||||||| || |||||||| ||||||| ||| |  | ||     ||| | |   ||   |    |  | |||| || | ||||||| || |  |   | ||| |||| |  ||||    
TGCTGAGAGACGAAGGTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTgtgagattctttctacc----tcatcata---taaaaaagttggtctcaaa-agtagatattcacctcaccctctattcttttctgtatgtaag---

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G178460_T01 (Zea mays), 5'ss of exon 7
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcct----cttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaat-----ctcttctatgggtaatcag-
| || ||||| |||||  | || |||||||||   ||  | || || |||||| | | ||| ||||||||||||||||||||||| || ||||||||  |||||| |||||    || |  ||||  | ||          |      |||||||   || ||||| |||| | |  |  ||      |  ||| | |||   ||  
TGCTGAGAGAAGAAGGGCTGGCCTCCTTCTATGGAGGCTTGGGTCCATCTCTTGTAGCAATTGCACCTTACATTGCTGTGAACTTCTGTGTTTTTGACCTgtgagattccttctactgcatatgagtactatgatacgtgaaagctccacacaaatctaa-atatttatctcacatttttatattgcgttctcttttggtgtacaag

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G08120.1 (Glycine max), 5'ss of exon 7
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctctt--cccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||| ||||||||||||||||     || |   |  | | | ||| | | | |    |  || ||   || ||  |  ||| | ||    ||                       
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccattcataatcttttatctttagaacattggatattgga-caggcactgataaccttc-tatggactatag---------------------

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G28890.1 (Glycine max), 5'ss of exon 5
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||| |||||||||||||||| |   |       | | | ||      ||     | ||||||          |||||   | || |  |||    ||||||||| ||||   
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagttcatta-----gtaatcttt------tatcatataagaacattgg------atattggacagacat-tgataaccttctatggataatag-

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G10900.1 (Glycine max), 5'ss of exon 4
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctctt--cccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||| ||||||||||||||||     || |   |  | | | ||| | | | |    |  || || | || ||  |  ||| | ||    ||                       
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccattcataatcttttatctttagaacattggatattgga-cagacactgataaccttc-tatggactatag---------------------

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G18140.1 (Glycine max), 5'ss of exon 7
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctc---ttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| ||||| ||||||||| ||||||| ||||||   || ||||| ||||||||  ||| |||||| ||||| ||||| ||||||||||| |||||||| |||| || ||  |     ||  ||  |  ||| ||   | |||| || |     |   | | || |  |  ||| ||||      ||| ||||| | | |||
TGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTTGTGTTTTTGACTTgtaagtttattaataatcttatatctttta-agtaaattgagagacactg-gatttggacat-tgaaattgaaacatcc-cgacttttatggatga-cag

upper sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G01500.1 (Arabidopsis thaliana), 5'ss of exon 7
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
| ||  | ||||||||||||||||| ||||| || ||||| || ||||| ||| |  | ||||| |||||||||||  | ||||| ||||| |||||| ||| ||  | ||         | ||||||  || | |   |        ||  ||| | | | ||| |  || |   ||    | ||||   |     
TGCTGCGGGAGGAAGGAGTTGCATCATTCTACAACGGTCTAGGTCCTTCGCTTTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTgtaagtctactaacagttcaaacattacccctgaatatttt------taactagattgtttacatattcgata---atacaatatatgcacag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249786|gb|CD715605.1|CD715605
EST:     CTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTT                         GGTGAAGAAGTCTTTGCCAGAGAAGTACCAAAAGAGGACTGAAACCTCTCT
genomic: CTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcc ... gggtaatcagGGTGAAGAAGTCTTTGCCAGAGAAGTACCAAAAGAGGACTGAAACCTCTCT
EST: gi|32268229|gb|CD717388.1|CD717388
EST:     CTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTT                         GGTGAAGAAGTCTTTGCCAGAGAAGTACCAAAAGAGGACTGAAACCTCTCT
genomic: CTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcc ... gggtaatcagGGTGAAGAAGTCTTTGCCAGAGAAGTACCAAAAGAGGACTGAAACCTCTCT