Sequence
atgc intronic sequence ATGC exonic sequenceAATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatcttttaatcttgtacccagttaaatatcactctccataaccaacctctttcactgatatcaaactttaaaatctaaccatgtgcaataaactcac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 6
AATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatcttttaatcttgt-acccagttaaatatc-actctccataaccaacctctttcactgatatcaaacttta---aaatctaaccatgtgcaataaactcac-----------------------------
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AATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGCGGGGGATCTCCTAGCAGCTAGAGTCACAGCAGgtgaacatagaatccccttatctagtcttttagctatgcttaattggtaatagcatcagagaatatgtgtttcctggtatgcctactactatgcagcaaaattttgaccgagtttttctcctgttggtatccag
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 7
AATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatcttttaatct-tgtacccagttaaatatc-actctccataaccaacctctttcactgatatcaaacttta---aaatctaaccatgtgcaataaactcac-----------------------------
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AATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTGCGGGGGATCTCCTAGCAGCTAGAGTCACAGCAGgtgaacataaaatccgcttatctagacttttagctattcttaattggtgacagcatttgaaaatacgcatttctcggtatgcctactactatgctgcgaatttttgagtaagtttttctcctgttggtatccag
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 7
AATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatctttta-atcttgtacccagttaaat-atcactctcca------taaccaacctctttcactgatatcaaactttaaaatctaaccat--gtgcaataaactcac------------------------------
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AATTTCTGCATAGAGCAGCTGATCTTACACTGGTGCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTAGAGTAACAGCAGgtgaactcaaacaccccttatgaagtgatttcatagctcttcgctgagttgataatagcatctgaacataagtatttttttatactacattgtcaatgcagcaattttttgtctaactcaattctactgttgatgtccag
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G14200.1 (Glycine max), 5'ss of exon 7
AATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatcttttaatcttgtacccagttaaatatcactctccataaccaacctctttcactgatatcaaactttaaaatctaaccatgtgcaataaactcac---
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AATTTCTGCATAGAGCAGCTGATCTTACATTGGTGCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTCGAGTAACAGCAGgtgaactcaaataccccttatgaagtgatttcttggctctttgctcag--ttgataatagcagctgaacatgagcatttgtttatac-tactagttttctgtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423954|gb|EC990307.1|EC990307EST: GCTGCTAGGGTAACAGCAG CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATC
genomic: GCTGCTAGGGTAACAGCAGgtcatctttt ... tgctttgcagCTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTCTTCACAGAGCAGCTGATCTCACTCTGGTGCCATCAGCAGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTAACAGCAGgtcatcttttaatcttgtacccagttaaatatcactctccataaccaacctctttcactgatatcaaactttaaaatctaaccatgtgcaataaactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa