Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaattgacaccactgtgctctcatgtgctttctttctacatgatatgaagttttctacctttctgatgtttagactattgacgtggtgaagatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 7
GTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaattgacaccactgtgctctcatgtgctttctttctacatgata-tgaagttttctacctttctgatgtttagactattgacgtggtgaagatc--
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GTGAAATCAAGAATGATGGGTGATTCAATGTACAAAAGTACTCTTGATTGTTTTGCCAAGACACTAAAGAATGATgtatg-gaatcctttccttgttttttttttctcaatttcttgtgtctattggtctatactactacaactct--tttttcacttgttcaaaagtaagaagtcat
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 6
GTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaattgacaccactgtgctctcatgtgctttctttctacatgatatgaagtt-ttctacctttctgatgtttagactattgacgtggtgaagatc
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GTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagctgctttccactgctacttttttgctctcttaagaac-atctaccaccattttgctttagttaagagttacatccatttttgctttagttacaagt
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 7
GTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaattgacaccactgtgctctcatgtgctttctttctacatgatatgaagtt-ttctacctttctgatgtttagactattgacgtggtgaagatc
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GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgctttccactgttacttttttgctctcttaagaac-atctaccatcattttgctttagttacaacaagttacagtcattaacagtgtggatcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407463|gb|CF213090.1|CF213090EST: CCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGAT GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGA
genomic: CCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaat ... tgttttgcagGGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGTTTTGTCAAGACTTTGAAGAATGATgtatgtgaattgacaccactgtgctctcatgtgctttctttctacatgatatgaagttttctacctttctgatgtttagactattgacgtggtgaagatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgaaga