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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtttttaacctctctctctctctctctctccctctctctctctctcacacacacacacattggaggaatttttccttgagctgggttttaatattggatggcttgtttgaaacag

Basic information

species Vitis vinifera
transcript Vv08s0007g01340.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824491|gb|FQ413158.1|FQ413158
EST:     CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACC                         AGGTGTTCCACCTGGTGCTCGATTTGAATC-TTATGGCCCACCTGGGCGTT
genomic: CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTGGTGCTCGATTTGA-TCCTTATGGCCCACCTGG-CGTT
EST: gi|110372149|gb|EC936298.1|EC936298
EST:     CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACC                         AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC
genomic: CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC
EST: gi|110718881|gb|EE096218.1|EE096218
EST:     CTGGGTTGGGTGGAGTAAGTGGGAGACCCCAGCTTTCCTGGAGGACA-CC                         AGGTGTTTCACCTGG
genomic: CTGGTTTGG-TGGAGTAGGTGG-AGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTGG
EST: gi|110356854|gb|EC919981.1|EC919981
EST:     GCTGGTTTGGTGGAGTAGGGTGGAGACCCCAGCTTTCCTGGAGGACAACC                         AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC
genomic: GCTGGTTTGGTGGAGTAGG-TGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC
EST: gi|351023717|gb|FQ448268.1|FQ448268
EST:     CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCCGGAGGACAACC                         AGGTGTTCCCCCTG
genomic: CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTG
EST: gi|349830477|gb|FQ416775.1|FQ416775
EST:     CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACC                         AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC
genomic: CGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtt ... tttgaaacagAGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTCCTGGAGGACAACCgtaagttgtttttaacctctctctctctctctctctccctctctctctctctcacacacacacacattggaggaatttttccttgagctgggttttaatattggatggcttgtttgaaacag

- - - - - - - - - - - TGGTGG
- - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA