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CATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatcatatattttatcaaaatcatcttttgctatgtgtacttgcgaattttctttctcctttgtctccaacattctttgtcctgggtttgtatg...
species | Vitis vinifera |
transcript | Vv07s0130g00270.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACEST: gi|110420000|gb|EC986260.1|EC986260
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACEST: gi|110717059|gb|EE092582.1|EE092582
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatcatatattttatcaaaatcatcttttgctatgtgtacttgcgaattttctttctcctttgtctccaacattctttgtcctgggtttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc