Sequence
atgc intronic sequence ATGC exonic sequenceGGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g34300.2 (Oryza sativa), 5'ss of exon 7
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttaga--atctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagtttta-gttggaatggagcagaagtagaaa
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AGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaatctttccctgagctgtctttgatttatttatgtccaaatcacaaccttcattgttcaattataattgaatattgtgtctgagttggcatgg---
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g34300.3 (Oryza sativa), 5'ss of exon 4
-----GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttaga--atctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagtttta-gttggaatggagcagaagtagaaa
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GAGAAAGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGgtaaggtattcaaatctttccctgagctgtctttgatttatttatgtccaaatcacaaccttcattgttcaattataattgaatattgtgtctgagttgg--------
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os04g01130.1 (Oryza sativa), 5'ss of exon 6
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttaga--atctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagtttta-gttggaatggagcagaagtagaaa
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AGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACACTAAAAAAACAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaattctttctctgagccgtctttgaattatttatgtccaaagcacactcctcattgttcaattataattgaatattgtctctgaattggcatgg---
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G484880_T04 (Zea mays), 5'ss of exon 7
-----GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatc-tgtgtgtgtgtggcacacaaaca-ggatttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa
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GACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcata----tcctagactaaatattaaaatgtttt---
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G484880_T05 (Zea mays), 5'ss of exon 7
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatc-tgtgtgtgtgtggcacacaaacagg-atttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa
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-------------------------------------TTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcata----tcctagactaaatattaaaatgtttt---
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G484880_T01 (Zea mays), 5'ss of exon 7
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtactta-tattccagtttagaatctgtgtgtgtgtggcacacaaacagg-atttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa--
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GGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGgtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcata----tcctagactaaatattaaaatgttttgtgtt
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G484880_T03 (Zea mays), 5'ss of exon 7
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatc-tgtgtgtgtgtggcaca----caaacaggatttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa
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-------------------------------------TTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGgtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcatatcc-tagactaaatattaaaatgttttgtgtt----
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G18240.1 (Glycine max), 5'ss of exon 8
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatctgtgtgtgt-gtggcacacaaacaggatttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa--------------------------------------------------------------------------------------------------
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GGGCAGTGGGACTGTGGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGgtacatggaaaattatt-aaattcactctttgttgttgtcctctcatatatgctaaaaatgcacatttgtagagttagaattaatggatgcttctcgtaaaggttaccatagccccctgaaagagagacccttgagtcactatgttttcctttcccttgaaattaaatgtgactaatgttgtgatatgggtgcctgcag
upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G21320.1 (Glycine max), 5'ss of exon 7
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagttttagttggaatgg--agcagaagtagaaa--
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GGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGgtacatggaaaattatt-aaattcactgt---tgttgtcctctcatatatgctaaaaatgcatatttgcagagttagcgcatgtttctggtaaaggttaccataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27755129|gb|CB035884.1|CB035884EST: TAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAG CTTGTTAAACTTCCGCGCATTCCAAATGTCGATGCAATATTGATAAAGTAT
genomic: TAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatat ... tttattgtagCTTGTTAAACTTCCGCGCATTCCAAATGTCGATGCAATATTGATAAAGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAAGgtacttatattccagtttagaatctgtgtgtgtgtggcacacaaacaggatttgatgatgcttaaaaatagttttagttggaatggagcagaagtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaga