Sequence
atgc intronic sequence ATGC exonic sequenceCACCCAAAGTGTACGAGATGGAGGAAAAGCTGTAATGATTGGACTTACGAAATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatcttctttctgccaatagattttttaatttttgtttcatatgagtgtttgattaggtaagtctaatggattactgtcttgatagcatcatctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os08g01760.1 (Oryza sativa), 5'ss of exon 7
CACCCAAAGTGTACGAGATGGAGGAAAAGCTGTAATGATTGGACTTACGAAATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatcttctttctgccaatagattttttaatttttgtttcatatgagtgtttgattaggtaagtctaatggattactg-tcttgatagcatcatctc----
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CGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTGATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGgtacagaaactagctccaatgaagtactattga--cttggttttctaagaaagagaagagagata---ctaataccttcttggtacaaacagcaaagccatttga
upper sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 8
CACCCAAAGTGTACGAGATGGAGGAAAAGCTGTAATGATTGGACTTACGAAATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatcttctttctgc-caatagattttttaatttttgtttcatatgagtgtttgattaggtaagtctaatggattactgtcttgatagcatcatctc-
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TACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGgtgtgttctctgtacttatatacttaactgttgtaaatgtggttgttaccggtactcccacatgttaat--ggttaccagtattttaaattgtttcttatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689960|gb|EC935059.1|EC935059EST: AATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAG ATAAAAGTCATTGGCTCATATGGAGCACGGGCAAGGCAGGATCTTCCCAAG
genomic: AATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatct ... aatgtaacagATAAAAGTCATTGGCTCATATGGAGCACGGGCAAGGCAGGATCTTCCCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACCCAAAGTGTACGAGATGGAGGAAAAGCTGTAATGATTGGACTTACGAAATCTGGTGCTGTAGGGGAGATAGATATAAATCGCCTTGTTCGCAGACAGgtatatatcttctttctgccaatagattttttaatttttgtttcatatgagtgtttgattaggtaagtctaatggattactgtcttgatagcatcatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT