Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttattcttgtctcatcatcttttcccaagccattaaatcatatgtcattgaacacatagaactcttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G077621_T01 (Zea mays), 5'ss of exon 7
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtt-tattcttgtctcatcatcttttcccaa--gccattaaatcatatgtcat-tgaacacatagaactcttg
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GTGGTGGTAAAGCTTGTAGATATTGTCCACTTCTTACATTTGGAGATATATAACGCCTTCGGTCATCCTGgtata-atccttatgtatcctacttattgttgttgcacagtagaactgctgttgagtgataacgattcttgattgtggtgttttgtggaaacaataaacaa---
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 5
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttattcttgtctcatcatcttttcccaagccattaaatcatatgtcattgaacacatagaactcttg--------
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GTGATGGTAAAGCTTGTAGATATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtata-------atccttacttatggatcctacttattgttgttgcacagtctgaactgctgctgagtactagtgtttc-ttgattatgatgctttgtggaaacgata
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 7
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaaca-tatgtttattcttgtctcatcatcttttcccaagccattaaatcatatgtcattgaacacatagaactcttg--
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ATTATGGAGAAGCTTGTAGAGATAGTCCATTTTTTGCATTTGGAGATAAACAATGCCTTTGGCACTGCAGgtatgtacccctaa---aggcatacttgcttcacttgctgtattatactcttctattatcacctaatttaatcattatttatcaatagaataacttatttgat
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 7
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacat-atgtttatt---cttgtctcatcatcttttccca--agccattaaatcatatgtcattgaacacatagaactcttg
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ATTATGGAGAAGCTTGTAGAGATAGTCCATTTTTTGCATTTGGAGATAAACAATGCCTTTGGCACTGAAGgtatgtacccac--ttaaggcattaggatcatacttgcttcacttgctgtattatactcttctagtatcacctaatttaatcgttatttatc-tataaaataa---
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 6
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttatt---cttgtctcatcat-cttttcccaagcca-ttaaatcatatgtcattgaacacatagaactcttg
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GTTATGGAGAAGCTTGTAGACATTGTCCATTTTTTGCATTTGGAGATAAGCAATGCCTTTGGCAATGCAGgtttgtacccac-taaaggccattagattatgtttgcttcacttgatttgaaatgctgttctagtgccacttaacgtgttaactattaagtat-taaatatc---
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 7
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttatt---cttgtctcatcat-cttttcccaagccattaaatcatatg-tcattgaacacatagaactcttg
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GTTATGGAGAAGCTTGTAGACATTGTCCATTTTTTGTATTTGGAGATAAGCAATGCCTTTGGCAATGCAGgtttgtacccac-taaaggccattagattatgtttgcttcacttgatttgtaatgctgttgtagtgccagtttatgttttaactattaagtat-taaatatc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718502|gb|FC069286.1|FC069286EST: TATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAG ATAGTGATACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGAC
genomic: TATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgc ... caacctgcagATAGTGATACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttattcttgtctcatcatcttttcccaagccattaaatcatatgtcattgaacacatagaactcttg
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaca