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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttccaattgtacattttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacag

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 7
GGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttccaatt---gtacattttcagtttctcatgctggttgtgttctcattttctgacaatg-ctat-aattacag----------
 | ||||||||| | || ||||  |||||||| | || | ||||||||||||| |||||||||||||| ||||||||||||   || ||    || |     |  ||||  |  | || |  ||  | || |   | | || || | |||||             
CGCTGCTTCTTTAGGCAGTTTTATAGGTCTGTAAATAAGACTGACTACTTGACTTTGCGCAATGGGTTTATCACTgtgagtcaacacttcttatagaacaatatgttcttttcttagtggatttacctttcttctatattgactgtgaattatgtgtatatatag

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 3
GGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttccaattgtacattttcagtttctca-tgctggttgtgttctcattttctgacaatgctataattacag
|||||||||||| |||||||||  ||||||||  | | | ||||||||||| | ||||||||||| || ||||| ||||||  || | |  |||      |||  | |   |||  | || |  | | || ||||| |||  ||  |  ||
GGATGCTTCTTTAGACAATTTTATAGGTCTGTAGGCAAGGCTGACTACTTGGCTTTGCGCAATGGATTTATCACGgtgagt--cctactccacaagacatgttctttaacactgaatttgcttccctcttttgacagtgcattatgtgtag

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G21510.1 (Glycine max), 5'ss of exon 7
GGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttccaattgtacattttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacag
|||||||||||| |||||||||  ||||||||  | | | ||||||||||| | ||||||||||| || ||||| ||||||          |     |    || | |  |||  | |    || | || | |||||||  ||  |  ||
GGATGCTTCTTTAGACAATTTTATAGGTCTGTGGGCAAGGCTGACTACTTGGCTTTGCGCAATGGATTTATCACGgtgagtcctactccacaagacatgttcttttaacactgaattttccttcctctttt-acaatgcattatgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     GGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT                         GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGG
genomic: GGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttcc ... ataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGG