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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGgtttgctactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgcaatttcctgtataataccttaagtttccatataaaggtaatgtttgattatattattttccgggttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02060.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G378836_T01 (Zea mays), 5'ss of exon 8
TATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGgtttgctactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgcaatttcctgtataataccttaagtttccat-ataaaggtaatgtttgattatattattttccgggttcag
 || ||||| || || ||||||||||||||| |||||||||| |||||||| | | | || ||||| || |  |||||   | ||||||| |||||||||||| | |       | |||   |    |  || | | | ||   |||  || | | |||     |    |||  |  || |  |  ||        | | |||| |   |                           
AATCGAGCCTCGGGCTCCTGAATGGTATTTTGCTCAGAAAATTGACTATCTAAGAGAAAAGGTTCACCCAGAGTTTGTTCGAGAACGACGTGCAATGAAGgttagtt-------catatgatagactaggaagtgtgactat--ttggactttgttaataggttttttgtttgtt-catgactcactagaccatagtcacaaagttcccg---------------------------

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 7
TATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGgtttgctactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgc-aatttcctgtataataccttaagtttccatataaaggtaatgtttgattatattattttccgggttcag
|||||||||||| || || |||||||| |||  |||||| || |||||||| ||||| ||||| || || |||||||| |   || |  | |||||||||||  |  |   |   || | |||  |  |   ||||  |   |   |||         |||   ||| |||   || | | ||   ||  | |   | |                                      
TATTGAGCCCCGGGCACCAGAATGGTACTTTGGTCAGAAGATGGACTATCTGAAAAATAAAGTACACCCAGCATTTGTCAGGGAAAGGAGAGCAATGAAGgt--gtcaactttttctttttaagtaatttgcttcttgtgctaaaagatgcaaccatttgactctgctaatggtctttttcat---tttggctgttacag-------------------------------------

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 7
TATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGgtttgctactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgc-aatttcctgtataataccttaagtttccatataaaggtaatgtttgattatattattttccgggttcag
|||||||||||| || || |||||||| |||  |||||| || |||||||| ||||| ||||| || || |||||||| |   || |  | |||||||||||  |  |   |   || | ||   |  |   ||||     ||   |||         |||   ||| |||   || | | ||   ||  | |   | |                                      
TATTGAGCCCCGGGCACCAGAATGGTACTTTGGTCAGAAGATGGACTATCTGAAAAATAAAGTACACCCAGCATTTGTCAGGGAAAGGAGAGCAATGAAGgt--gtcaactttttctttttatgtaatttgcttcttgcgccaaaagatgccaccatttgactctgctaatggtctttttgat---tttggctgttacag-------------------------------------

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGgtttgc--tactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgcaatttcctgtataataccttaagtttccatataaaggtaatgtttgattatattattttccgggttcag
||| ||||| || || ||||| ||||||||||||||||| || || || || || |||||||||||||| || ||||| |   |||| || || |||||||||| |  | |||     | | |       || || || || | |   |   ||||||||  |   |   |||| | || |  | | |   ||||   | |    |                                
TATCGAGCCACGAGCTCCTGAGTGGTATTTTTCTCAGAAGATGGATTACCTGAAGAACAAAGTTCATCCTGCTTTTGTCAGGGAACGTCGTGCTATGAAGgttttctttgctgctttttctctttctgagtatatcct-atcataaaagtgttgtttcaagaa---tctgatttac-gttttttgctt---gtttgtttgttgcag--------------------------------