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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttag

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 7
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttag
|||||   | |||||  ||||||| || ||||||||||||||||||||||| ||||||||  | || |||  | |||||||||   | |||||||| |||||||    | ||  |  || ||   ||  |||||  || || ||||       ||||| ||   || | |  |||||||                  
TAATGAAAACTGGTCATTGTTTTGTCCCAATGAAGCTCCAGGTTTGGCTGACTGTTGGGGAGATGAGTTTCAGAATCTGTACAAGAAATATGAAAGAGAGgtaagatgtgtg-ctgggtgtgcagtttattgaa--gtaatatctaaagaatatttgttaac-ctagcatgcaatttcag-----------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 7
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatc----attctgattttgtttgtgtttctttgaaatgt-gatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttag
||||||  | |||||  ||||||||||||||||||||||||| ||||||||||| |||||| | || ||||   || ||||||   | ||||| ||  | |||| |    |     |   ||| | ||| | |  |   | | ||  |     |||| |||   ||  ||   ||||   ||||                  
TAATGGAGAATGGTCATTGTTTTGCCCTAATGAAGCTCCAGGGTTGGCTGATTGCTGGGGTGAGGAGTTTGATAATTTGTACAAGAAATATGAGAGCCAAgtaagctgaaaagtgaacactgtatttgtatgtacgctttattgaaatgggaatgtgctttactaaccttgctttctggattcag-----------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 7
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatc----attctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttag
||||||  | |||||  | ||||||||||||||||||||||| ||||||||||  |||||| | || ||||   || ||||||   | ||||| ||  | |||| |    ||    | | | ||||| | | |   | || |||  |     |||| |||   ||  ||   ||||  |||||                  
TAATGGAGAATGGTCATTATTTTGCCCTAATGAAGCTCCAGGGTTGGCTGATTCCTGGGGTGAGGAGTTTGATAATTTGTACAAGAAATATGAGAGCCAAgtaagctgaaatgtgaactgtatttgtatgtatgctatat-tgaaatgggaatgtgctttagtaaccttgctttcttgtttcag-----------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 7
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattctgattttgtttgt--gtttctttgaa------atgtgatttctatttgtgttttg-tcaaaattaacttctaatttcactc---tttttttgctcttag
 |||||||| |||||  |||||||||| |||||||| ||||||||||||||||| |||||| ||||||||| | |  ||||||| || |||||||| || ||||   ||  |  ||||| |||     | ||| ||         || |||  || |   ||||| | |  |||  |||    ||  |  |   ||  | ||  | |||
CAATGGGCAATGGTCTTTGTTTTGCCCCAATGAAGCGCCAGGTTTGGCTGATTGCTGGGGTGAAGAATTTGAGAAATTGTACACTCAATATGAAAGAGAAgtaagt-tttggtctttgtatgttgacctgttttaatgttttgcatgttttgaatattccttttgcttattattgccttgcttttctaaccaaattgatgtgtacatag

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 6
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttg--tgttttgtcaaaattaacttctaatttcactctttttttgctcttag
                                   ||| || |||   |   || |    |   |  | ||   |||| ||     ||  |  |  | |       ||   | | ||  || ||   |  |||| ||  |  | |   ||  || |  |      | ||                              
-----------------------------------CTCGAGATTTTTTTCTATGCTCT--TTGGGTGTCTG-ATATCTTTATGGAAAGAGTTCAGAGCAATGGGCAAT---GGTCTTTGTTTTGCCCCAATGAAGTGCCAGgtttggctgattgctagggtggggtgaag-----------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 7
TAATGGGCATTGGTCCCTGTTTTGCCCTAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaat-----------cattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcac-tctttttttgctcttag
 ||||| || |||||  ||||||| || | |||||| |||||||||||||||||||||||| |  |||||| ||| || ||    |  |||||||| || ||||            ||| |  || ||||| || |||||| ||| ||    || || |||    || | |    |   || | |    |  | | || |  |   |||
CAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCAGGTTTGGCTGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCATCGATATGAAAGAGAAgtaagtttgatcttcacatgcaaatattgttggtctttctt-gaagtgc---ttttacttgctaattattagtgctttgtttttacaaaatatgtcttataacatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714052|gb|FC064127.1|FC064127
EST:     ATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAG                         GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTG
genomic: ATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattc ... ttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTG